Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8h21
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   4.9  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   4.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.5  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 233 TCSACSRYLHAATTPS 280
           TC  CS  +H  T PS
Sbjct: 12  TCLICSPSVHCGTRPS 27


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 474 GSEGPDQRDTSISVSLVVH 418
           GS GP+  + S SVS  VH
Sbjct: 38  GSYGPEAGNVSCSVSWEVH 56


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/31 (22%), Positives = 17/31 (54%)
 Frame = -2

Query: 471 SEGPDQRDTSISVSLVVHVNHFTYRSCGANI 379
           +E  +Q   ++  ++  +++HF   SC  N+
Sbjct: 556 NESEEQCPYTVDAAIYGNISHFINHSCDPNL 586


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +1

Query: 238 LCVFPIPSRSHNSLGKGIVDALLGAGHEVTWATPFPPKEST 360
           L VF +PS S   +  GI   L      +T     PP E T
Sbjct: 232 LLVFYVPSESGEKVTLGISALLSMTVFLMTIRESLPPTEKT 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,534
Number of Sequences: 438
Number of extensions: 2875
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)