Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8h14
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1296 - 25951758-25951983,25952134-25952159,25952626-259527...    29   4.1  
06_03_0159 - 17358853-17360781                                         29   4.1  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           27   9.4  

>08_02_1296 -
           25951758-25951983,25952134-25952159,25952626-25952710,
           25952828-25952959,25953037-25953180,25953254-25953312,
           25953381-25953687,25954211-25954292,25954369-25954502,
           25954587-25954680,25954751-25954874,25955136-25955195
          Length = 490

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 32/108 (29%), Positives = 44/108 (40%)
 Frame = +3

Query: 114 REIHAVQKSWAPVNANSFATGSELLRRLFNTYPDTKEYFKMVRKLPEEEYSQNPQFKAHV 293
           +E+H  Q S A  N    AT      +L+  +P   +  K   K P  E+S     K H 
Sbjct: 327 KELHIDQPSPAIANTIQVATN-----QLY--HPQQVDLSK--EKQPSTEFSPGQNSKCHK 377

Query: 294 INLMTSLNLAVNNLNQPEIVAAMMTKLGESHRRRQIKEKNFHELKEVI 437
               TS N   N L QP+I  A     G   +  Q  EKN +   ++I
Sbjct: 378 KVTETSTNGEENQLQQPKI--ADQQPSGHKEQMDQQPEKNRNHEAQLI 423


>06_03_0159 - 17358853-17360781
          Length = 642

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
 Frame = -1

Query: 158 GVDGGP*FLNCVYLSPREPGDRVHH------VRIPTPPHVAKP 48
           G  GGP     ++L+P  P    HH      +R P PPH+  P
Sbjct: 107 GGGGGPLLALRLFLAPLHPAAVTHHSFNSALLRFPLPPHLLPP 149


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 113 PREPGDRVHHVRIPTPPHVAKPGA 42
           P  P    HH   P PPH   PGA
Sbjct: 289 PLPPSHHHHHGHHPPPPHPLPPGA 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,310,944
Number of Sequences: 37544
Number of extensions: 355432
Number of successful extensions: 942
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)