Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8h07
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.69 
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    28   0.91 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.1  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    27   2.1  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   3.7  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    26   4.8  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   4.8  

>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 328 VYINKTTGYFLCSKCNLHGDWTI 396
           V  NK   YF+C  CN   DW +
Sbjct: 8   VLFNKIRSYFICPGCNCLPDWPV 30


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +1

Query: 391 TILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWENVIKDTMSMSALNET 540
           +I++ + + +   +S++  + K++N   S+KNEW     D   +    ET
Sbjct: 77  SIIKELSELSSQTLSVQSQLLKVKNSIDSYKNEWSKKTNDAQILLNSYET 126


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 358 LCSKCN-LHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWENVIKDTMSMSALN 534
           LC   N + GD T  E+ ++K  +E +   ++D  Q    ++ N W+ V+    S++ L+
Sbjct: 425 LCVTINDILGDETSSEQCIQK--LEAAFARFVDNQQIYPLTYDNTWKGVV----SVAGLS 478

Query: 535 ETELLDLFRLYEFPFHSEAG 594
              L D    Y    H   G
Sbjct: 479 GDSLADFGNSYYNDHHFHYG 498


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  LFLLAHNVKTAITNFEMLHSIRINRYINSFKSITSRNDWNCYQKQIHNIGLQDIPKIT 210
           L  LA ++  A  N  ++  I  NR+I     I+S+N  N Y    +   LQD PKI+
Sbjct: 323 LVTLADSLCYASDNAFVVKEILSNRHILMRDLISSKNQTNSYLSAANR--LQDSPKIS 378


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 376 LHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWENVIKDTMSMS 525
           L  D T  E +   A +  ++K+ +DKL N ++ FKN    ++ D + ++
Sbjct: 846 LTADHTNYETV--SADINQNLKETLDKLLNGSSDFKNNEIELLHDQIRIT 893


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 209 QLLKYEKYCGRKVLPYKTDSRL*LQNVRYAQQNRIART 322
           +L K  K C R + PY+ DS    +  RY    + ++T
Sbjct: 366 KLKKMRKLCSRSLEPYELDSNTQRKRKRYEDSLKKSKT 403


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 352 YFLCSKCNLHGDWTILERIVKKAK 423
           Y++ SK N   DW+I +  VK+ K
Sbjct: 541 YYILSKGNYFVDWSICDEYVKRFK 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,594
Number of Sequences: 5004
Number of extensions: 45973
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)