Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8h07
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756...    28   5.0  
06_03_0651 - 23164377-23165969                                         28   6.6  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    27   8.7  
07_03_1621 + 28187846-28187915,28189214-28189293,28189485-281895...    27   8.7  

>11_02_0032 +
           7564153-7564719,7564844-7565128,7565207-7565524,
           7565612-7565839,7566662-7566762,7566852-7566933,
           7567230-7567364,7567460-7567516,7568030-7568167
          Length = 636

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 358 LCSKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWEN 498
           LCSKC  H D   L+     +K     K +    + DTA+  N   N
Sbjct: 32  LCSKCPKHDDGATLQSETTSSKFMCLYKFFRTSSEGDTAAVDNVLRN 78


>06_03_0651 - 23164377-23165969
          Length = 530

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +1

Query: 358 LCSKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWENVIK 507
           L + C  HG+  + ER+ K+   + S    ++ L ++  +  + WE+VI+
Sbjct: 457 LLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVYATASRWEDVIR 506


>11_02_0051 +
           7776312-7780228,7780627-7780695,7781920-7781979,
           7782225-7782324,7782720-7782801,7782928-7782940,
           7783621-7783681
          Length = 1433

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -1

Query: 294 YRTFCSYRRESVL----YGKTFLPQYFSYFSNCNFRNILKTNV 178
           +  FC+ ++  VL    Y    LPQ    F +  + NILKT++
Sbjct: 583 HEVFCNMKKLRVLLLCFYNSRKLPQSIDEFKHLRYLNILKTSI 625


>07_03_1621 +
           28187846-28187915,28189214-28189293,28189485-28189550,
           28189801-28189848,28189967-28190034,28190107-28190179,
           28190284-28190445,28190620-28190814,28191114-28191190,
           28191280-28191481
          Length = 346

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/48 (20%), Positives = 28/48 (58%)
 Frame = -2

Query: 155 FQSFLLVIDLKLLMYLFILMECSISKFVIAVFTL*ANKNKNNLIDLVW 12
           F+   L++D++  +  F+ ++ +++  ++A+     N  +N + DL+W
Sbjct: 74  FEMKSLIVDVENCLQAFVGVDYNLNSIIVAIRGTQENSMQNWIKDLIW 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,546
Number of Sequences: 37544
Number of extensions: 229196
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)