Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8h06
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1032 + 10447474-10448030,10448784-10449813 34 0.076
07_03_0093 + 13330867-13332312 30 1.2
03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350 29 3.8
05_07_0234 - 28566846-28567766 28 5.0
01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724 28 5.0
09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004 28 6.6
05_06_0163 - 26082276-26082369,26082751-26082814,26082899-260829... 28 6.6
05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705 28 6.6
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 27 8.7
05_03_0558 + 15454552-15454746,15456700-15457134 27 8.7
04_03_0870 + 20431215-20431419,20432559-20433439,20433829-204339... 27 8.7
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 27 8.7
>08_01_1032 + 10447474-10448030,10448784-10449813
Length = 528
Score = 34.3 bits (75), Expect = 0.076
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = -1
Query: 307 DPCSKLHTSRKCLSLSIHSAPSRVLWLVSRAE----CIWCLRRKRTAPAWSLRGGSQSCA 140
D + + + LSL + S PS L SR + +W LRR A A +LR G + CA
Sbjct: 68 DASTAASSPKHALSLLLSSPPSPGLPPASRRDLLVRALWELRRDPDAAALALRWGEEGCA 127
Query: 139 EACAR----PASAPSTQIW 95
A R P P + W
Sbjct: 128 AAGERAGPPPPPPPPAEAW 146
>07_03_0093 + 13330867-13332312
Length = 481
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = -1
Query: 313 PLDPCSKLHTSRKCLSLSIHSAPSRVLWLVSRAECIWCLRRKRTAPAWSLRGGSQSCAEA 134
P S L L+ HS P+ V+ + C+W +R T P W LR A+
Sbjct: 269 PASRLSWLGRHNLLLAAGSHSGPAGVVGDI----CLWDVRASATVPVWELREKEDCFADI 324
Query: 133 CARPA 119
A A
Sbjct: 325 AASEA 329
>03_05_1047 + 29935929-29935974,29948868-29949709,29950162-29950350
Length = 358
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 319 SFIDNARRSAEIYGLEIEN-MTAEDIKKRWNGIQ 417
+F+D AR ++G E+ A+D++K W G+Q
Sbjct: 83 TFLDTARHRRVLWGWANESDSAADDVRKGWAGVQ 116
>05_07_0234 - 28566846-28567766
Length = 306
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 99 IWVEGADAGRAHASAQLWEPPRSDQAGAVRLRRR 200
+W GA AG A ASA P +S G++ RR
Sbjct: 156 LWTPGAGAGSASASASPRPPRKSGSTGSMARWRR 189
>01_05_0555 - 23231327-23231547,23232103-23232232,23233260-23233724
Length = 271
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 45 DHCGQRIRWFVCRLLRLQIWVEGADAGRAHASAQL 149
DH G+ +F+ RL RLQ+W E A G S ++
Sbjct: 119 DHLGRS--FFLSRLFRLQVWSEHAGQGELIESVRV 151
>09_03_0012 - 11514244-11514797,11515045-11515205,11515943-11516004
Length = 258
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +3
Query: 111 GADAGRAHASAQLWEPPRSDQAGAVRLRRRHQ 206
GA G HA A R + GAVRLRRR Q
Sbjct: 125 GAGGGWRHAGAGGRRRHRRARRGAVRLRRRRQ 156
>05_06_0163 -
26082276-26082369,26082751-26082814,26082899-26082972,
26083644-26083759,26084644-26084909,26085002-26085092
Length = 234
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = -1
Query: 265 LSIHSAPSRVLWLVSRAECIWCLRR 191
+S++++ +V+++ S A +WC+RR
Sbjct: 56 ISLYNSVMKVVFITSSAAIVWCMRR 80
>05_03_0237 + 10765061-10765507,10766438-10766567,10768485-10768705
Length = 265
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 45 DHCGQRIRWFVCRLLRLQIWVEGADAG 125
DH G+ +F+ RL RLQ+W E A G
Sbjct: 113 DHLGRS--FFLSRLFRLQVWSEHAGQG 137
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/86 (25%), Positives = 36/86 (41%)
Frame = +1
Query: 262 TKTNIYEKCGVLNTGLGDSSFIDNARRSAEIYGLEIENMTAEDIKKRWNGIQVPGDYVGV 441
T T +E GVL G+ F D +GL ++T ++ W+ I + + +
Sbjct: 180 TNTTTHEILGVLTKGITQICFFDTPGLMLGHHGLPHRDVTVR-VESAWSSINLYDLLIVL 238
Query: 442 FEPDAGFLRSELAVNAYVKLSKEAGA 519
F+ + + V VKL K GA
Sbjct: 239 FDVNRHLKTPDTRV---VKLIKRLGA 261
>05_03_0558 + 15454552-15454746,15456700-15457134
Length = 209
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 157 GSQSCAEACARPASAPSTQIW 95
G + CAEAC A AP IW
Sbjct: 29 GDKICAEACVAYALAPLASIW 49
>04_03_0870 +
20431215-20431419,20432559-20433439,20433829-20433990,
20434742-20435001,20435110-20435200,20435487-20435675
Length = 595
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 319 SFIDNARRSAEIYGLEIENMTA-EDIKKRWNGIQ 417
+F D A+R ++G E+ TA +D+ K W GIQ
Sbjct: 329 TFYDPAKRRRILWGWANESDTAADDVAKGWAGIQ 362
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -3
Query: 134 VCSSSISTFNPDLEA**PADEPTD 63
+CS S STFN LEA P EP D
Sbjct: 2572 ICSISASTFNRHLEAWEPFVEPFD 2595
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,009,846
Number of Sequences: 37544
Number of extensions: 302674
Number of successful extensions: 982
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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