Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8h06
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          30   0.020
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.0  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   9.2  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   9.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.2  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 0.020
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 45  DHCGQRIRWFVCRLLRLQIWVEGADAG 125
           D   +RI  +VCR+L   +WV GA  G
Sbjct: 74  DKSEKRIPLYVCRVLHTTVWVAGAQRG 100


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 360 SVDLSASASVINKTRIP*TRVQNSTLLVNVCLCQFIQLLPEFSGSYQER 214
           +V LSASA V+  +    T  Q     +       +QL+ E   + QER
Sbjct: 187 TVTLSASAMVLGLSSYSLTEFQQRRAFLETRQSLEVQLVIEEQSTEQER 235


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 576 NNFIFSRCHGR 544
           +N IFSRC GR
Sbjct: 39  SNEIFSRCDGR 49


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 576 NNFIFSRCHGR 544
           +N IFSRC GR
Sbjct: 39  SNEIFSRCDGR 49


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 261 QFIQLLPEFSGSYQER 214
           QF Q +PE S + QE+
Sbjct: 394 QFTQYIPESSSNLQEK 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,160
Number of Sequences: 438
Number of extensions: 2938
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)