Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8h05
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 159 2e-40
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 69 5e-13
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 31 0.11
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 30 0.19
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 29 0.34
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha... 29 0.59
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 28 0.78
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 28 1.0
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 1.0
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 27 1.8
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 27 2.4
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 3.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.2
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 26 4.2
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 26 4.2
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 25 7.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.3
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.6
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 159 bits (387), Expect = 2e-40
Identities = 74/134 (55%), Positives = 96/134 (71%)
Frame = +3
Query: 141 RIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGGTCLNVGCIPSK 320
R+ + + + + DL VIG GPGGYVAAI+ AQLG+K + VEK TLGGTCLNVGCIPSK
Sbjct: 34 RLYSAKASGNGEYDLCVIGGGPGGYVAAIRGAQLGLKTICVEKRGTLGGTCLNVGCIPSK 93
Query: 321 ALLHNSHLYHMAKHDFKQRGIETGEVTFDFKKMMEYKANAVKGLTGGIAMLFQKNKVNLV 500
ALL+NSH+YH KHD K+RGI+ V+ + +MM+ K ++VK LT GI LF+KNKV
Sbjct: 94 ALLNNSHIYHTVKHDTKRRGIDVSGVSVNLSQMMKAKDDSVKSLTSGIEYLFKKNKVEYA 153
Query: 501 KGVGTIVAPNKVEV 542
KG G+ + P + V
Sbjct: 154 KGTGSFIDPQTLSV 167
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 68.9 bits (161), Expect = 5e-13
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Frame = +3
Query: 180 DLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGGTCLNVGCIPSKALLHNSHLYHMAK 359
D +VIG G GG +A +AA+ G KV +E LGGTC+N GC+P K + + + L K
Sbjct: 9 DYLVIGGGSGGLASARRAAKHGAKVALIEASGRLGGTCVNYGCVPKKIMWNIADLVAKMK 68
Query: 360 HDFKQRGIETGEV-TFDFKKMMEYKANAVKGLTGGI-AMLFQKNKVNLVKGVGTIVAPNK 533
KQ G ++ +FD+ M++ K +A G GI K+ V + G + V+P +
Sbjct: 69 -TAKQNGFPNSQLGSFDW-GMIKRKRDAYIGRLNGIYERNVNKDGVAYISGHASFVSPTE 126
Query: 534 VEV 542
V V
Sbjct: 127 VAV 129
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 31.1 bits (67), Expect = 0.11
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 168 THDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKD 272
T DAD+++IG+G G + G KV+ +E+D
Sbjct: 3 TQDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 30.3 bits (65), Expect = 0.19
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 168 THDADLVVIGSGPGGYVAAIKAAQLGMKVVSVE 266
TH+ +V+IGSGP G+ AAI A+ +K V E
Sbjct: 2 THNK-VVIIGSGPAGHTAAIYLARGELKPVMYE 33
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 29.5 bits (63), Expect = 0.34
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +3
Query: 114 PTFRSGSLVRIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGG 287
P+ S S +T ++ +VIG G G A LG V+ ++K+ GG
Sbjct: 18 PSTNSASFFSTLRFNMSTANNTQAIVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGG 75
>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 28.7 bits (61), Expect = 0.59
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +3
Query: 123 RSGSLVRIATRQYATTHD----ADLVVIGSGPGGYVAA--IKAAQLGMKVVSVEKDPTLG 284
R ++ R TR+Y + D +D+V++G+G G AA I + +K+ +E G
Sbjct: 55 RESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPG 114
Query: 285 G 287
G
Sbjct: 115 G 115
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 0.78
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 174 DADLVVIGSGPGGYVAAIKAAQLGMK 251
D D+ ++G+GP G AAI+ Q K
Sbjct: 90 DVDVCIVGAGPAGLSAAIRIKQQAAK 115
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 27.9 bits (59), Expect = 1.0
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 135 LVRIATRQYATTHDA--DLVVIGSGPGGYVAAIKAAQLGMKVVSVEK 269
+ R R + T+ + ++VVIG G G AA A++LG K + K
Sbjct: 1 MFRTTKRYFCTSFNRRKNVVVIGGGHAGVEAAAAASRLGAKTTLLTK 47
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 1.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 183 LVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGG 287
+ +IGSGP G AA + + G VV E+ GG
Sbjct: 1758 VAIIGSGPAGLAAADQLNRAGHHVVIYERADRPGG 1792
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 319 FDGIHPTLRQVPPKVGSFSTETTFMPSWAALIAATYP 209
FDG+ L+++P ++ SFST + L +P
Sbjct: 245 FDGVEYALKKIPLRLRSFSTSSNIFRESRTLARLNHP 281
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 322 AFDGIHPTLRQVPPKVGSFSTETTFMPSWAALIAATYPPGPEPITTRSASC 170
A+ G + P G FS+ A+ YPP PE +++ S+SC
Sbjct: 204 AYFGSKDLKQSAPLFTGIFSSLDDIPTYSASDYLPAYPPNPEGMSSTSSSC 254
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -3
Query: 530 IWGNYSSYTFDKINLVLLKEHCNTSCEAFNSISFIFHHLFEVKCNFTSFNTPLLEVM 360
I+GNY + + IN LL + N ++ + + F ++CN + FN +L+++
Sbjct: 1938 IYGNYL-HLEEYINKKLLLINPNEEPDSLLFYALAYDLKFLIRCNQSQFNCDILQLL 1993
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 271 SFSTETTFMPSWAALIAATYPPGPEPITTRSASCV 167
S S T+ + S A+++++TY GP IT S S V
Sbjct: 159 SSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYV 193
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 4.2
Identities = 20/82 (24%), Positives = 33/82 (40%)
Frame = +3
Query: 36 LRILYFNPKIQKKLLNMGYKFLKLASPTFRSGSLVRIATRQYATTHDADLVVIGSGPGGY 215
+R+ N ++ N +KF K LV A +D V+ GPG
Sbjct: 4 IRVRNNNAASDAEVRNTVFKFNKDFGQHILKNPLVAQGIVDKADLKQSD-TVLEVGPGTG 62
Query: 216 VAAIKAAQLGMKVVSVEKDPTL 281
++ + KV++VE DP +
Sbjct: 63 NLTVRMLEKARKVIAVEMDPRM 84
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 126 SGSLVRIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVS 260
S +++ T++Y H LVVIG+G G V A +K++S
Sbjct: 325 SDNIISFTTKRY---HTRPLVVIGAGAGAAVTAAGVLGDMIKIMS 366
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 222 AIKAAQLGMKVVSVEKDPTLGGTCLNVGCIPSKALLHNSHL 344
A+KA Q +K+ S PTL L CIP + H +L
Sbjct: 404 ALKALQHTLKISS---KPTLTNATLQQNCIPQYRVGHQDNL 441
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 479 LKEHCNTSCEAFNSISFIFHHLFEVKCNFTSFNTPLLE 366
+K+ + ++ SIS ++H L + N S N LLE
Sbjct: 778 MKQSFTSLVNSYQSISNLYHELRDDHVNMQSQNNTLLE 815
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 530 IWGNYSSYTFDKINLVLLKEHCNTSCEAFNS 438
++ NY+ Y+ DKI + KE NT + FNS
Sbjct: 774 MYNNYADYSPDKIKEIKEKE-LNTYNDYFNS 803
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,533
Number of Sequences: 5004
Number of extensions: 48539
Number of successful extensions: 171
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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