Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8h01
         (109 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen...    26   4.1  
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen...    26   4.1  
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    26   4.1  
J05066-1|AAA27989.1|  261|Caenorhabditis elegans alpha-2 (IV) co...    26   4.1  
U10401-10|AAA19062.2|  476|Caenorhabditis elegans Hypothetical p...    25   7.1  
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ...    25   9.4  
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ...    25   9.4  

>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1759

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 16   FKNLGFLF--FNNVCMY*SNSELLY 84
            F  + FLF  FNNVC Y S +E  Y
Sbjct: 1584 FSTMPFLFCDFNNVCNYASRNEKSY 1608


>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
            protein.
          Length = 1758

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 16   FKNLGFLF--FNNVCMY*SNSELLY 84
            F  + FLF  FNNVC Y S +E  Y
Sbjct: 1583 FSTMPFLFCDFNNVCNYASRNEKSY 1607


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
            protein.
          Length = 1795

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 16   FKNLGFLF--FNNVCMY*SNSELLY 84
            F  + FLF  FNNVC Y S +E  Y
Sbjct: 1620 FSTMPFLFCDFNNVCNYASRNEKSY 1644


>J05066-1|AAA27989.1|  261|Caenorhabditis elegans alpha-2 (IV)
           collagen protein.
          Length = 261

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 16  FKNLGFLF--FNNVCMY*SNSELLY 84
           F  + FLF  FNNVC Y S +E  Y
Sbjct: 86  FSTMPFLFCDFNNVCNYASRNEKSY 110


>U10401-10|AAA19062.2|  476|Caenorhabditis elegans Hypothetical
           protein T20B12.9 protein.
          Length = 476

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 11  RCLKIWVFFSLTMSVCTKV 67
           +CL +W+ FS+    CT V
Sbjct: 283 KCLDVWMIFSVIFIFCTLV 301


>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
            isoform a protein.
          Length = 1758

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 16   FKNLGFLF--FNNVCMY*SNSELLY 84
            F  + FLF  FNNVC Y S ++  Y
Sbjct: 1583 FSTMPFLFCDFNNVCNYASRNDKSY 1607


>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
            isoform b protein.
          Length = 1759

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 16   FKNLGFLF--FNNVCMY*SNSELLY 84
            F  + FLF  FNNVC Y S ++  Y
Sbjct: 1584 FSTMPFLFCDFNNVCNYASRNDKSY 1608


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,547
Number of Sequences: 27780
Number of extensions: 16301
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 12,740,198
effective HSP length: 17
effective length of database: 12,267,938
effective search space used: 220822884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)