Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8g23
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...   105   4e-24
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    95   6e-21
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    59   4e-10
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    57   2e-09
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    41   1e-04
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    31   0.086
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   3.2  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    26   3.2  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   7.5  
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.5  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score =  105 bits (252), Expect = 4e-24
 Identities = 55/135 (40%), Positives = 76/135 (56%)
 Frame = +3

Query: 150 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 329
           GLFINN+ V S  G   K  +P+  ++I EV                  F+  +PWR   
Sbjct: 24  GLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFS 83

Query: 330 ASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 509
           +++RG  +++LAD IE++  YLAS+ETLDNGK    +  GD+ A+    RYY GWADK +
Sbjct: 84  SAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLAR-GDVQAAADCFRYYGGWADKDY 142

Query: 510 GNVLPADGKYFAYTR 554
           G  +  D K FAYTR
Sbjct: 143 GQTIETDIKRFAYTR 157


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 95.1 bits (226), Expect = 6e-21
 Identities = 52/135 (38%), Positives = 78/135 (57%)
 Frame = +3

Query: 150 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 329
           GL+IN EW KS++  T++T +P+  +VIA+V                  FK    W+ + 
Sbjct: 22  GLYINGEWHKSAE--TWETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKT---WKKVP 76

Query: 330 ASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 509
            SE+G L+ KLA+L E+    LA++E +D+GKP   +  GD+  +I  LRY AGWADKI+
Sbjct: 77  GSEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIY 136

Query: 510 GNVLPADGKYFAYTR 554
           G V+P   +  AY +
Sbjct: 137 GQVIPTGPEKLAYAK 151


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 33/124 (26%), Positives = 60/124 (48%)
 Frame = +3

Query: 156 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 335
           F+  +W+ S + KTF+ +NPA G++I +V                  FK    ++     
Sbjct: 21  FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFK---TYKNFTHV 77

Query: 336 ERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGN 515
           +R  L+ + A+LI  ++  L  + TL+NGKP   +   ++      L++YA  A +  G+
Sbjct: 78  QRSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEM-EVTTCSGYLKWYAAEAVRTFGD 136

Query: 516 VLPA 527
           V P+
Sbjct: 137 VAPS 140


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 36/120 (30%), Positives = 59/120 (49%)
 Frame = +3

Query: 156 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 335
           +I  +WV ++ GKTF  ENP   + +A V                  F     +R  D  
Sbjct: 27  YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFL---SYRNSDIK 83

Query: 336 ERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGN 515
           ER A++ +  DLI  +   LA++ TL+NGK   D+  G++  + K + ++AG A +I G+
Sbjct: 84  ERYAILRRWYDLIMENADDLATMMTLENGKALGDAK-GEVVYAAKFIDWFAGEALRISGD 142


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
 Frame = +3

Query: 153 LFINNEWVKSSD--GKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTM 326
           LFI+ ++V   +   K     NPA  ++I    +                F+ G  W   
Sbjct: 23  LFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI-WAKW 81

Query: 327 DASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWAD 500
              +RG ++ K+A ++   R  LA ++T++ GKP   + F D+ +      YYA  A+
Sbjct: 82  PGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALF-DIDSCADMFEYYAEVAE 138


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 31.5 bits (68), Expect = 0.086
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +3

Query: 315 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRY 482
           W++   +ER   +  L + I R++   A +   D GK   D+ FG++  +++ + +
Sbjct: 41  WKSTSFAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGEILVTLEKINW 96


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 47   VAERLQIGSGAKSEFCNSCFSGTGSPNKT-GNFIHWSLHKQ*VGEV 181
            +A  +     +  + CN+   G    NK  GN IH+ L K   G+V
Sbjct: 1054 LAHEINAADSSSEQICNALRRGFLRLNKKLGNVIHYDLRKSSEGDV 1099


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 492 TRRSTVGFLLKHTDHRNTSP 433
           +RRST GFL KH+  ++ SP
Sbjct: 19  SRRSTKGFLQKHSSLKDGSP 38


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 253 TKQMWTKL*RQLEMRSNLDHHGEQWTPPRGGPLST 357
           T  M TKL  Q +M+  +D H   WTP      ST
Sbjct: 24  TSAMDTKL--QTKMKEIIDQHTSTWTPVVSSVTST 56


>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 126

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 486 RSTVGFLLKHTDHRNTSPCMVCRCPAS 406
           R    F  K  ++ NT+  +VC CP S
Sbjct: 41  RKYENFFAKENENLNTAARLVCDCPIS 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,985
Number of Sequences: 5004
Number of extensions: 43618
Number of successful extensions: 109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)