Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8g23
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910...   108   3e-24
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140...   102   2e-22
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128...    99   2e-21
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066...    98   4e-21
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000...    80   1e-15
02_01_0550 + 4044683-4044784,4044862-4044975,4045277-4045360,404...    49   2e-07
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469...    52   3e-07
08_02_0717 + 20372728-20372836,20372936-20373078,20374131-203742...    38   0.005
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360...    31   0.47 
05_05_0263 - 23673014-23673697,23673772-23674188                       29   2.5  
02_03_0343 + 17961977-17962596,17962670-17963015,17965933-179662...    29   3.3  
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879...    27   7.6  

>06_01_1105 +
           9102059-9102167,9103770-9103907,9104125-9104267,
           9104362-9104515,9104610-9104839,9105382-9105471,
           9105606-9105779,9105873-9106010,9106212-9106349,
           9106450-9106511,9106744-9106972,9108531-9109364
          Length = 812

 Score =  108 bits (259), Expect = 3e-24
 Identities = 56/135 (41%), Positives = 78/135 (57%)
 Frame = +3

Query: 135 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSP 314
           ++ YT L I+ ++V S+ GKTF T +P  G++IA V                  F  G P
Sbjct: 65  QVNYTQLLIDGKFVDSASGKTFPTLDPRTGELIAHVAEGDAEDINRAVHAARKAFDEG-P 123

Query: 315 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGW 494
           W  M A ER  ++ + ADLIE+    +A+LET DNGKPY  +   ++    + +RYYAGW
Sbjct: 124 WPKMTAYERSRILLRFADLIEKHNDEIAALETWDNGKPYAQAANIEVPMVARLMRYYAGW 183

Query: 495 ADKIHGNVLPADGKY 539
           ADKIHG V+PADG +
Sbjct: 184 ADKIHGLVVPADGPH 198


>01_05_0545 +
           23109920-23110040,23113363-23113505,23113626-23114009,
           23114106-23114219,23114310-23114483,23114608-23114745,
           23114884-23115021,23115094-23115155,23115268-23115541
          Length = 515

 Score =  102 bits (245), Expect = 2e-22
 Identities = 57/139 (41%), Positives = 75/139 (53%)
 Frame = +3

Query: 135 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSP 314
           EI +T LFIN E+V ++ GKTFKT +P  G V+A +                  F+ G  
Sbjct: 23  EIKFTKLFINGEFVDAASGKTFKTRDPRTGDVLAHIAEADKADVDLAVKAAREAFEHGK- 81

Query: 315 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGW 494
           W  M   ER  ++NKLADL+E+    LA+L+  D GK        D+ A+ + +RYYAG 
Sbjct: 82  WPRMSGYERSRVMNKLADLVEQHADELAALDGADAGKLLTLGKIIDMPAAAQMMRYYAGA 141

Query: 495 ADKIHGNVLPADGKYFAYT 551
           ADKIHG  L   GKY  YT
Sbjct: 142 ADKIHGESLRVAGKYQGYT 160


>02_05_0620 -
           30412004-30412429,30412509-30412646,30412729-30412866,
           30412966-30413139,30413211-30413684,30413775-30413917,
           30414002-30414160,30414943-30415042
          Length = 583

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 53/135 (39%), Positives = 73/135 (54%)
 Frame = +3

Query: 135 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSP 314
           ++ YT L IN  +V ++ GKTF T +P  G VIA V                  F  G P
Sbjct: 69  DVKYTKLLINGNFVDAASGKTFATVDPRTGDVIARVAEGDAEDVNRAVAAARRAFDEG-P 127

Query: 315 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGW 494
           W  M A ER  ++ + ADLIE+    +A+LET D GK  + +   ++    + +RYY GW
Sbjct: 128 WPRMTAYERCRVLLRFADLIEQHADEIAALETWDGGKTLEQTTGTEVPMVARYMRYYGGW 187

Query: 495 ADKIHGNVLPADGKY 539
           ADKIHG V+PADG +
Sbjct: 188 ADKIHGLVVPADGPH 202


>06_03_0627 +
           22903346-22903523,22906010-22906152,22906235-22906618,
           22906980-22907069,22907147-22907320,22907414-22907551,
           22907719-22907856,22907958-22908019,22908240-22908513
          Length = 526

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 56/139 (40%), Positives = 73/139 (52%)
 Frame = +3

Query: 135 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSP 314
           EI YT LFIN  +V ++ GKTF+T +P  G VIA V                  F  G  
Sbjct: 42  EIRYTKLFINGRFVDAASGKTFETRDPRTGDVIARVAEGDKEDVDLAVKAAREAFDHGE- 100

Query: 315 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGW 494
           W  M  SERG ++ K A+++ER    LA+LE+LD GKP   +   D+   +  LRY+AG 
Sbjct: 101 WPRMSGSERGRVMAKYAEVVERHADELAALESLDAGKPLAAARAVDVGECVGILRYFAGA 160

Query: 495 ADKIHGNVLPADGKYFAYT 551
           ADKIHG  L    +   YT
Sbjct: 161 ADKIHGETLKMSRQLQGYT 179


>01_05_0544 +
           23098921-23098953,23099209-23099272,23099942-23100084,
           23100246-23100719,23100950-23101123,23101230-23101367,
           23101489-23101589,23101910-23102183
          Length = 466

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 44/121 (36%), Positives = 60/121 (49%)
 Frame = +3

Query: 189 GKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLAD 368
           GKTF+T +P  G+VIA++                  F  G PW  M    RG +++K AD
Sbjct: 33  GKTFETRDPRTGEVIAKIAEGDKADIDLAVKAAREAFDHG-PWPRMSGFARGRILHKFAD 91

Query: 369 LIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGNVLPADGKYFAY 548
           L+E+    LA+L+T+D GK +      D+      LRYYAG ADK+HG  L        Y
Sbjct: 92  LVEQHVEELAALDTVDAGKLFAMGKLVDIPGGANLLRYYAGAADKVHGETLKMARPCHGY 151

Query: 549 T 551
           T
Sbjct: 152 T 152


>02_01_0550 +
           4044683-4044784,4044862-4044975,4045277-4045360,
           4045818-4045917,4046923-4046971,4047071-4047158,
           4047251-4047361,4047771-4047833,4047942-4048052,
           4048517-4048582,4048689-4048766,4049553-4049630,
           4049784-4049850,4049930-4050015,4050301-4050333,
           4050426-4050458,4050754-4050854,4050986-4051071,
           4051478-4051584,4051683-4051839,4051854-4051984
          Length = 614

 Score = 49.2 bits (112), Expect(2) = 2e-07
 Identities = 31/109 (28%), Positives = 50/109 (45%)
 Frame = +3

Query: 198 FKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDASERGALINKLADLIE 377
           +  +NPA G+ +A V                  F     W  + A+ER   + K  DLI 
Sbjct: 99  YLVQNPATGETLANVSCMGSKETSDAIASAHSTFY---SWSKLTANERSKALRKWHDLII 155

Query: 378 RDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGNVLP 524
             +  LA L TL+ GKP K++     Y +   + Y+A  A +I+G+++P
Sbjct: 156 SHKEELALLMTLEQGKPMKEALVEVTYGA-SFIEYFAEEAKRIYGDIIP 203



 Score = 23.4 bits (48), Expect(2) = 2e-07
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 138 ILYTGLFINNEWVKSSDGKTFKTEN 212
           +L T   I  +WV + DGKT +  N
Sbjct: 51  LLRTQGLIGGKWVDAYDGKTIEVVN 75


>04_04_0154 -
           23146445-23146535,23146689-23146795,23146933-23146993,
           23147070-23147221,23147306-23147383,23147696-23147809,
           23147880-23147956,23148128-23148194,23148341-23148406,
           23148528-23148651,23148733-23148825,23149446-23149594,
           23149681-23149761,23150502-23150644,23150758-23150872
          Length = 505

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
 Frame = +3

Query: 150 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKL--GSPWRT 323
           GLFI   W + S G+     NPA    I ++                  F    G  W  
Sbjct: 11  GLFIGGGWREPSLGRRLPVVNPATEATIGDIPAATAEDVELAVSAARDAFGRDGGRHWSR 70

Query: 324 MDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADK 503
              + R   +  +A  I+  ++YLA LETLD+GKP  D   GD+        YYA  A+ 
Sbjct: 71  APGAVRAKYLKAIAAKIKDKKSYLALLETLDSGKPL-DEAAGDMEDVAACFEYYADLAEA 129

Query: 504 IHG 512
           + G
Sbjct: 130 LDG 132


>08_02_0717 +
           20372728-20372836,20372936-20373078,20374131-20374211,
           20374307-20374510,20374789-20374796,20375153-20375245,
           20375377-20375500,20375585-20375650,20375841-20375907,
           20376600-20376676,20377032-20377145,20377546-20377623,
           20377705-20377856,20377960-20378020,20378292-20378398,
           20378497-20378562,20379099-20379177,20379671-20379967
          Length = 641

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
 Frame = +3

Query: 153 LFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKL--GSPWRTM 326
           LF+  EW   + G+     NPA    I E+                   K   G  W   
Sbjct: 10  LFVAGEWRAPALGRRLPVVNPATESPIGEIPAGTAEDVDAAVAAAREALKRNRGRDWARA 69

Query: 327 DASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKI 506
             + R   +  +A  I   ++ LA LETLD GKP  ++ + D+        Y+A  A+ +
Sbjct: 70  PGAVRAKYLRAIAAKIIERKSELARLETLDCGKPLDEAAW-DMDDVAGCFEYFADLAESL 128


>01_01_0489 +
           3608720-3608811,3609326-3609431,3609518-3609581,
           3609905-3609965,3610017-3610144,3610236-3610385,
           3610537-3610791,3611060-3611265,3611469-3611696,
           3612161-3612259
          Length = 462

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 357 KLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKN 473
           K+  L    R YLASL + D+  P KD  F ++YA+  N
Sbjct: 287 KIYRLRNPSRKYLASLSSYDSSNPTKDWGFPNIYANSDN 325


>05_05_0263 - 23673014-23673697,23673772-23674188
          Length = 366

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 303 LGSPWRTMDASERGALINKLADLIERDR 386
           + SPWR +DA   G ++ +L  L++R R
Sbjct: 1   MDSPWRDLDADVLGFILKRLPCLVDRRR 28


>02_03_0343 +
           17961977-17962596,17962670-17963015,17965933-17966291,
           17966384-17966636
          Length = 525

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 479 VLRRVGRQDPRECPARRRKILCLHS 553
           VL  V RQDP ECP +    LC+ S
Sbjct: 300 VLLSVQRQDPEECPDQLISSLCISS 324


>03_05_0223 -
           22087076-22087340,22087448-22087726,22087808-22087950,
           22088029-22088133,22088272-22088465,22088561-22088753,
           22088893-22089202,22089335-22089558,22089862-22089990,
           22090019-22090078,22090426-22090617,22091463-22091522,
           22091606-22091688,22092473-22092611,22092949-22093083,
           22093187-22093462
          Length = 928

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 411 LDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 509
           LD+ KP      GD +++ +  R   GW D+I+
Sbjct: 388 LDSSKPISGDDLGDSFSTDEPARKEKGWVDEIY 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,978,590
Number of Sequences: 37544
Number of extensions: 306819
Number of successful extensions: 768
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)