Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8g18
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428...    29   4.3  
04_04_0892 + 29136474-29136483,29137558-29137653,29137747-29137940     29   4.3  
08_02_1488 + 27485154-27485390,27485441-27485968                       28   5.7  
07_03_0249 - 15816515-15816868,15817749-15817958,15818051-158182...    28   5.7  
12_02_0025 + 12408933-12409464,12409590-12409686,12410121-124101...    28   7.5  
06_03_1222 - 28521799-28521900,28521952-28522029,28522292-285243...    28   7.5  
03_02_0755 + 10932897-10933010,10933446-10933577,10933666-109337...    28   7.5  
05_05_0176 - 22968068-22968630,22968729-22968861,22968943-229691...    27   9.9  

>10_07_0130 +
           13241085-13241151,13241268-13241339,13242458-13242862,
           13243057-13243112,13244116-13244274,13244379-13244498,
           13244591-13245361,13245902-13246078,13246192-13246669,
           13247502-13248094
          Length = 965

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 297 DKEKSCLTLFFDQVAKIFKHLFYGDVEKPSNSRIELLESDFAVTNDSGTSREISN 461
           D  K CL    +   +IF +L + D    S S  ++  ++ A+ N+ G   +++N
Sbjct: 195 DSIKQCLITTVESSLRIFAYLAFADTNSVS-SITDVTSNEVAICNNDGKDAKLAN 248


>04_04_0892 + 29136474-29136483,29137558-29137653,29137747-29137940
          Length = 99

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +3

Query: 198 EISTSQIEKPIGVPENGTSTTQQKH-----ENETVLREDKEKSCLTLF 326
           E +T QI+   G+P   T TT QKH      N++VL ED+    L  F
Sbjct: 22  ENATRQIKPVNGLPRLMTITTPQKHGKENNSNDSVLTEDENIEPLVAF 69


>08_02_1488 + 27485154-27485390,27485441-27485968
          Length = 254

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +3

Query: 75  HVFIAITFMKYSKCYVIEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPENGTS 254
           H  IA   +  +  Y  +D GK+       ++ ++ +  ++E S S +E  +G   NG +
Sbjct: 118 HSDIATMCVSKTSKYTHQDRGKIGKLGHGSQRGDVYRRLESEASKSAVESLVGNGRNGRT 177

Query: 255 TTQQK 269
            T+++
Sbjct: 178 LTERR 182


>07_03_0249 -
           15816515-15816868,15817749-15817958,15818051-15818245,
           15818318-15818393,15819982-15820021,15820155-15820283,
           15820363-15820405
          Length = 348

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 129 DSGKVDAQKQLLRKLEILQEPKNEISTSQIEKPIGVPE 242
           ++GKVD  + L+RK+E+L   K  ++     K   +P+
Sbjct: 148 EAGKVDEAEALMRKVELLNAEKTALTNQADNKVAMLPQ 185


>12_02_0025 +
           12408933-12409464,12409590-12409686,12410121-12410127,
           12412339-12412465,12412907-12413136
          Length = 330

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/78 (19%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
 Frame = +3

Query: 120 VIEDSGKVDAQKQLLRKLEILQEPKNEISTSQIEKP-------IGVPENGTSTTQQKHEN 278
           ++ + G  + + Q  + L++L+       T+  ++P       + VP  G    QQK EN
Sbjct: 164 MVSNMGWSEERLQTYQVLQVLESDSATYYTADFKEPPNLHTTFVFVPNKGVQNIQQKEEN 223

Query: 279 ETVLREDKEKSCLTLFFD 332
           +   +++++     ++ D
Sbjct: 224 DVTEKKEEKHEAPAIYED 241


>06_03_1222 -
           28521799-28521900,28521952-28522029,28522292-28524335,
           28525188-28525303
          Length = 779

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 360 FYGDVEKPSNSRIELLESDFAVTNDSGTSRE 452
           F GD+ K + +R+ L  +DF++ N +GT  E
Sbjct: 343 FVGDLSKVNFTRLNLRIADFSINNFTGTVPE 373


>03_02_0755 +
           10932897-10933010,10933446-10933577,10933666-10933750,
           10934668-10934831,10934911-10935357
          Length = 313

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 24/87 (27%), Positives = 38/87 (43%)
 Frame = +3

Query: 381 PSNSRIELLESDFAVTNDSGTSREISNHHDIFPNRFDLTDPNAEVEIFEPRYHGRLKEET 560
           P+  RI L E     +N S     +    DIF  +F +  P  + E     YHGR++  +
Sbjct: 12  PAVKRI-LQEVKEMQSNPSPDFMAMPLEEDIFEWQFAILGPR-DSEFEGGIYHGRIQLPS 69

Query: 561 KEALKCPEGYIMTPNGCTVRNSKMIIS 641
               K P   ++TP+G      K+ +S
Sbjct: 70  DYPFKPPSFMLLTPSGRFEIQKKICLS 96


>05_05_0176 -
           22968068-22968630,22968729-22968861,22968943-22969133,
           22969313-22969380,22970277-22970372,22970452-22970595,
           22970693-22970764,22971346-22971481,22971582-22971672
          Length = 497

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 276 NETVLREDKEKSCLTLFFDQVAKIFKHLFYGDVEKPSNS 392
           N  VL  D   SC+ L  D  AK+    F+GD ++   S
Sbjct: 340 NPPVLLRDLSTSCIYLTEDNAAKVSDISFWGDKKEDEKS 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,594
Number of Sequences: 37544
Number of extensions: 308930
Number of successful extensions: 967
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)