Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8g17
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr...    29   0.55 
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    27   1.7  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    27   2.9  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   2.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.1  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   6.7  

>SPBPB2B2.13 |||galactokinase Gal1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 460 IINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSGLLYSSIXCTSS 609
           + + Y+ EKYPE+      PL+    K++ +   P   GL  S+  C +S
Sbjct: 125 VAHKYILEKYPELVSGGKKPLKGL--KLIFDGNVPTGGGLSSSAAFCVAS 172


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 24  WWYLQFLFFSIKNSRSKARSLQRIET*LLKTIDFNNLDQKTS 149
           WW+  FLFFS+ N           +    +T+D+    QK S
Sbjct: 296 WWHAPFLFFSVLNVEDFTNFKMVCDESKAQTVDWEFEGQKCS 337


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 337 IPYDLVFINLDQKPEWIFNFSPKGTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASD 516
           IP D++F+ +DQK    F  S          +   AL    I+  +LD+++  IP+   +
Sbjct: 237 IPGDVIFV-IDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGE 295

Query: 517 PLRRAQDKIL 546
            +R  + K+L
Sbjct: 296 CIRPNELKVL 305


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 316 LTLNAKNIPYDLVFINLDQK-PEWIFNFSPKGTVP 417
           L L  +N   D + IN D   P W   FSPK T+P
Sbjct: 91  LHLENQNSIVDSIHINADTVLPVWSEAFSPKSTLP 125


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 586  CIVSLIVLEQSSQREFCLELCAE 518
            C++S+ + E S   +FC   CAE
Sbjct: 1175 CLISMKIHEFSKSNDFCSRSCAE 1197


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 328 AKNIPYDLVFINLDQKP 378
           AK + YD +++NL +KP
Sbjct: 3   AKTVQYDNIYLNLSEKP 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,400
Number of Sequences: 5004
Number of extensions: 48091
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)