Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8g17
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.8  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   9.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.8  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 51  RKTRIVDTTSTSSRNE 4
           RKTRI+D    +S NE
Sbjct: 74  RKTRIIDVVYNASNNE 89


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 492 WILFIKINIYNVAVKECLTRFIFQ 421
           W+ F  +NI     K C++   FQ
Sbjct: 285 WVPFFCVNIVTSYCKTCISGRAFQ 308


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 233 KPEMFCPHIVENFAFLL*DFVLTPKG 310
           K +++C  I++NF  L  + V  P+G
Sbjct: 58  KVQLYCECILKNFNILDKNNVFKPQG 83


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 502 EESLDTFHQDKH 467
           E +LD FH DK+
Sbjct: 207 EHTLDRFHNDKY 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,042
Number of Sequences: 438
Number of extensions: 3148
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)