Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8g14
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    86   3e-18

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 86.2 bits (204), Expect = 3e-18
 Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
 Frame = +1

Query: 325 SPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLF 498
           SP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L+
Sbjct: 117 SPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLY 176

Query: 499 LTILLGFYFTILXAYEYIEASFTIADRIYGSTFF 600
           +TI L F F    AYEY  A FTI+D +YG++F+
Sbjct: 177 MTIALSFLFLGGQAYEYWNAPFTISDSVYGASFY 210



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
 Frame = +3

Query: 21  HPFHLVDYRP*PFTGAIGVL--TLITGXXXXXXXXXXXXXXXXXXXXXXXAYQ**RDISR 194
           HP+H+V   P PF  ++ +    L                           Y   RD+S 
Sbjct: 14  HPYHIVSASPWPFFLSVVLFFNCLAATLYLHGYKHSSVFFGISFLGLLATMYLWFRDMST 73

Query: 195 EGTYQGKHTILVNKGLR*G 251
           E    G HT  V KGL+ G
Sbjct: 74  EANIHGAHTKAVTKGLKIG 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,312
Number of Sequences: 5004
Number of extensions: 26842
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)