Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8g12
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch...    85   1e-17
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    69   4e-13
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    43   3e-05
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    38   0.001
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    34   0.018
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    29   0.67 
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    28   0.88 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   2.7  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   6.2  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   6.2  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   8.2  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   8.2  

>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 129

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 37/79 (46%), Positives = 54/79 (68%)
 Frame = +3

Query: 84  TRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDA 263
           T +EV    T  +   ++ + VYD+ KFLD HPGG EVL+++AG+DAS  FEDVGHS DA
Sbjct: 7   TVEEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDA 66

Query: 264 RELMKGYVVGELVDADKVP 320
           +EL++ + +G L+  +  P
Sbjct: 67  QELLEKFYIGNLLRTEDGP 85


>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 69.3 bits (162), Expect = 4e-13
 Identities = 25/76 (32%), Positives = 52/76 (68%)
 Frame = +3

Query: 72  LRQYTRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGH 251
           ++ +  +E+ +   + +   +I+  VYDV  F D+HPGG +++++ AG+DA++ ++D+GH
Sbjct: 3   VKYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGH 62

Query: 252 SMDARELMKGYVVGEL 299
           S+ A EL++   +G+L
Sbjct: 63  SIAADELLEEMYIGDL 78


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 24/73 (32%), Positives = 39/73 (53%)
 Frame = +3

Query: 84  TRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDA 263
           T++E+A  KT  +    I   VY+V  +L  HP G + +++ AG+DA+  F      ++ 
Sbjct: 75  TKEELAKHKTKEDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIFMKFHAWVNE 134

Query: 264 RELMKGYVVGELV 302
             L+K   VG LV
Sbjct: 135 EALLKTSFVGFLV 147


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +3

Query: 108 KTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFED--VGHSMDARELMKG 281
           ++ T  L +I+ +V+D+  F  EHPGG  +L +  GKDA+  F      H+  A  L+  
Sbjct: 369 QSKTRPLVLINGVVHDMTGF--EHPGGQGLLRSAFGKDATAAFNGGVYDHTNGAHNLLST 426

Query: 282 YVVGELVDADKVPISK 329
           Y V  +    +V + K
Sbjct: 427 YRVAVVRGGMEVEVWK 442


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +3

Query: 84  TRDEVADSKTATETLFIIDNIVYDVHKFLDEHPGGHEVLINVAGKDASEEFEDVGHSMDA 263
           T +E+A   +  +    I   VY+V  +L  HP G + ++  +G DA++ +      ++ 
Sbjct: 73  TAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPYLKHHDWVNE 132

Query: 264 RELMKGYVVGELV 302
            EL+K   VG LV
Sbjct: 133 EELLKTSFVGYLV 145


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 586 RRHTTHRTRIQSASNPSYILESSDKPQSIEMNSQRQFRVAIT 461
           RRH  + T   + +NP +   S+ +PQ+ E  SQ+  R AIT
Sbjct: 117 RRHRKNGTHASTDNNP-FSESSTLQPQTAERTSQQAVRSAIT 157


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 186  GHEVLINVAGKDASEEF-EDVGHSMDARELMKGYVVGELVDADKVPISKKQYSWEDTAKT 362
            GH ++  V   +  + F +D        +L+KG +VG   D+ ++ +S KQ   +D+++ 
Sbjct: 1167 GHNLIARVKIGELFDTFIKDWKPHFHVNQLVKGSIVGIDNDSKRIEMSLKQSKIKDSSEI 1226

Query: 363  SETEA 377
            ++T A
Sbjct: 1227 TKTFA 1231


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 577 TTHRTRIQSASNPSYILESSDKPQSIE 497
           T+ R R +S+ +PSY+ +SS    S+E
Sbjct: 100 TSERKRAKSSVSPSYLTDSSPSDLSVE 126


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 412 WASRSPCSTHIYSDSCLLSQHGTVVASSFLYFVVYRMILECS 537
           W   +P    + +D   L ++ T+V S+ +YF+   +IL C+
Sbjct: 139 WCYVTPVGAALIADQ-FLGRYNTIVCSAVIYFIGI-LILTCT 178


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 456 LPVIATRNCRCEFISILCGLSD 521
           LP++A  N +C F+SI C + D
Sbjct: 378 LPILARLNQKCYFMSIPCCVHD 399


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = -1

Query: 323 DGHFVGIDELAHHVTLHEFPGVHAVAHVLELLGGVLAGDV 204
           +G    +D++ HH+       V      + +LGG+L+  +
Sbjct: 105 EGFQDAVDKVIHHINFERDTKVQVFEATIRILGGLLSSHI 144


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 231 EFEDVGHSMDARELMKGYVVGELVDAD-KVPISKKQYSWEDTAKTSETEASF 383
           EFE+V H+  A E M+G  + + +    ++  SK       T   S T + F
Sbjct: 645 EFEEVCHAAKAMEKMQGAALDDKIKGGIRLSYSKNPLGVRSTENLSTTASLF 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,282
Number of Sequences: 5004
Number of extensions: 31147
Number of successful extensions: 114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)