Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8g09
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.001
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.001
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   7.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 372 DFIIGGLAGVGATIITNPMDVVKTRLQLQGELKAKTEQSTRYRGIFHALYVIARADGALA 551
           DF+ GG+A   +     P++ VK  LQ+Q  +  +  +  RY+G+      I +  G L+
Sbjct: 13  DFLAGGVAAAISKTTVAPIERVKLLLQVQ-HISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 552 LQKG 563
             +G
Sbjct: 72  YWRG 75



 Score = 31.1 bits (67), Expect = 0.010
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +3

Query: 384 GGLAGVGATIITNPMDVVKTRLQLQGELKAKTEQSTRYRGIFHALYVIARADGALALQKG 563
           GG AG  +     P+D  +TRL        K      + G+ + L  I +ADG   L +G
Sbjct: 122 GGAAGATSLCFVYPLDFARTRLAAD---VGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178

Query: 564 LAPAMLLGFTMNSVRLGMYHVA 629
              ++       +   G Y  A
Sbjct: 179 FGVSVQGIIIYRAAYFGFYDTA 200


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 372 DFIIGGLAGVGATIITNPMDVVKTRLQLQGELKAKTEQSTRYRGIFHALYVIARADGALA 551
           DF+ GG+A   +     P++ VK  LQ+Q  +  +  +  RY+G+      I +  G L+
Sbjct: 13  DFLAGGVAAAISKTTVAPIERVKLLLQVQ-HISKQISEEQRYKGMIDCFVRIPKEQGFLS 71

Query: 552 LQKG 563
             +G
Sbjct: 72  YWRG 75



 Score = 31.1 bits (67), Expect = 0.010
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +3

Query: 384 GGLAGVGATIITNPMDVVKTRLQLQGELKAKTEQSTRYRGIFHALYVIARADGALALQKG 563
           GG AG  +     P+D  +TRL        K      + G+ + L  I +ADG   L +G
Sbjct: 122 GGAAGATSLCFVYPLDFARTRLAAD---VGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178

Query: 564 LAPAMLLGFTMNSVRLGMYHVA 629
              ++       +   G Y  A
Sbjct: 179 FGVSVQGIIIYRAAYFGFYDTA 200


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 410 NNNKSNGRSENSPAATGRIESEDR 481
           N+NK NG  +N     G  +++++
Sbjct: 466 NDNKQNGNRQNDNKQNGNRQNDNK 489



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 410 NNNKSNGRSENSPAATGRIESEDR 481
           N+NK NG  +N     G  +++++
Sbjct: 501 NDNKQNGNRQNDNKRNGNRQNDNQ 524


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 404 SHNNNKSNGRSENSPAATGRIESEDRTVHQI*GDLPC 514
           S+NNN +N  + N+  A         + +   GD+ C
Sbjct: 238 SNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDMFC 274


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 117 LVRKRKLLTIIMRRLVSYLFSM 182
           L+RKRK L I +   VSYL  +
Sbjct: 410 LLRKRKELFIAIVCFVSYLIGL 431


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 117 LVRKRKLLTIIMRRLVSYLFSM 182
           L+RKRK L I +   VSYL  +
Sbjct: 463 LLRKRKELFIAIVCFVSYLIGL 484


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 39  VIRSITSAKLFLPNNSIIHTTLR 107
           +++SIT A  F  N  I+H  ++
Sbjct: 160 ILKSITCALQFCHNAGIVHADVK 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,130
Number of Sequences: 438
Number of extensions: 3804
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)