Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8g02
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.87 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    24   1.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   1.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 532 MNMYLLYISII--FAFLVKIPIYFVHL*LPQAHVEAP 636
           +  ++L+  I+  F+  V + +  VH   PQ HV AP
Sbjct: 303 LGKFVLFTMILDTFSICVTVVVLNVHFRSPQTHVMAP 339


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = +3

Query: 18  YNNF--YNSFMFYKKYIL 65
           YNN+  YN  ++YK YI+
Sbjct: 94  YNNYNNYNKKLYYKNYII 111


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 21  NNFYNSFMFYKKYIL 65
           NN YN  ++YK YI+
Sbjct: 108 NNNYNKKLYYKNYII 122


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  YNNFYNSFMFYKKYIL 65
           YNN YN  ++YK YI+
Sbjct: 338 YNN-YNKKLYYKNYII 352


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 18  YNNFYNSFMFYKKYIL 65
           YNN YN  ++YK YI+
Sbjct: 333 YNN-YNKKLYYKNYII 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,459
Number of Sequences: 438
Number of extensions: 1452
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)