Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f20
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.047
SPBC409.21 |sec66||ER protein translocation subcomplex subunit S... 30 0.19
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 30 0.19
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 29 0.33
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 1.3
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 2.3
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 26 3.1
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 25 7.2
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 9.5
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 25 9.5
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 25 9.5
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.047
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = +1
Query: 193 SKALSAANNVFVRDYATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEIQSKNDIT 372
SKALS A N + + ++ ++ + + Y ITK+DID +L+ D+T
Sbjct: 135 SKALSEAQNTILDGRHIRIERAKVNRTIRISSAPHQPY--ITKKDIDNLLEPYGEVEDVT 192
Query: 373 S--SQSLLVIRCCGELVPEELPEQRTLLVQKIWSVLTERGIAMDISHY 510
QS ++R + +E T L W VL + HY
Sbjct: 193 EIPDQSAFLVRF---VYRDEAIAAYTALKHSAWPVLWAENVTYQNGHY 237
>SPBC409.21 |sec66||ER protein translocation subcomplex subunit
Sec66 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 30.3 bits (65), Expect = 0.19
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +1
Query: 286 DSEVRRYGRITKRDIDEVLDEIQSKNDITSSQSLLVIRCCGELVPEE 426
D +R++GR+ K E++D ++ N + + + + C E++ E
Sbjct: 101 DELIRKFGRLEKETELELMDIAKTANSLQPGWNQFIFQTCNEIIENE 147
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 30.3 bits (65), Expect = 0.19
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +1
Query: 148 ILNSVKTAEASAFLNSKALSAANNVFVRDYATTKKTESLDPLLQKLDSEVRRYGRITK-R 324
+++ + AEAS+ L + L + +DY+ +K L + K+D + +
Sbjct: 1258 VVHYLDEAEASSSLKEEQLCRQEFCYGKDYSNVRKMLLLPKSITKVDVLGSDFKEDSPFY 1317
Query: 325 DIDEVLDEIQSKNDITSSQSLLVIRCCGELVPEELPEQRTLLV 453
+ VL+E S+ D+T S+LV R + P R V
Sbjct: 1318 HLTHVLEESDSQLDLTLLDSVLVQRASAPPIDIYCPGSRQFTV 1360
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.5 bits (63), Expect = 0.33
Identities = 26/108 (24%), Positives = 45/108 (41%)
Frame = +1
Query: 139 RTLILNSVKTAEASAFLNSKALSAANNVFVRDYATTKKTESLDPLLQKLDSEVRRYGRIT 318
R +++S+ E L + Y + + P+L K+D +
Sbjct: 138 RAEVMHSLAACEGCILLVDASQGIQAQTLSNFYMAFSQNLVIIPVLNKVD--------LP 189
Query: 319 KRDIDEVLDEIQSKNDITSSQSLLVIRCCGELVPEELPEQRTLLVQKI 462
D+D L ++Q DI S+ +LV G+ V + LPE ++QKI
Sbjct: 190 TADVDRTLIQVQQTFDIPMSKPILVSSKTGKNVEQILPE----IIQKI 233
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 349 IQSKNDITSSQSLLVIRCCGELVPEELPEQRTLLVQKIWSVLTERGIAMDISHY 510
IQ+KN I QS++ + + E+ TL++Q +W ++ +Y
Sbjct: 838 IQTKNSILKVQSIIRGFLLRQTLEEKTKHDATLIIQSLWLTFKAHKHYKELQYY 891
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 190 NSKALSAANNVFVRDYAT-TKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEI 351
N K AA + + +T + +E LDPL K ++ R+ R ID VLD +
Sbjct: 559 NDKEAVAALDEWYSILSTCSNPSELLDPLKDKHEASDTSMNRVELRQIDGVLDRM 613
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 26.2 bits (55), Expect = 3.1
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +1
Query: 178 SAFLNSKALSAANNVFVRDYATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEIQS 357
S F+N K S + + D E+L P+L L Y + ++ D+
Sbjct: 268 SGFVNKKMESVVKGISLFDSFIP---EAL-PILSDLLPSEENYRNLVRQVYDKDTYFKTK 323
Query: 358 KNDITSSQSLLVIRCCGELV 417
K+D+T S LLVI EL+
Sbjct: 324 KDDLTLSSELLVIPATLELI 343
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 189 EECTGFGSFHRIQNKC 142
+ECT FG RI+N C
Sbjct: 213 QECTKFGKSSRIRNTC 228
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = +3
Query: 84 HVVVVEINEIRSVLYGCCKNTYF 152
H V ++++E+R Y C + +F
Sbjct: 176 HPVRIDVSEVRKFCYNCASDEHF 198
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 394 IRCCGELVPEELPEQRTLLVQKIWSVLTERGIAMDISHYNALLRV 528
+R EL E+L + L + L RG MD++ NAL++V
Sbjct: 166 LRSAQELAREDLEAHKAKLQE-----LLRRGTPMDLAEANALMKV 205
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -3
Query: 173 SAVFTEFKISVLAAPVKYRTNFVDL 99
S++F +FK+SV KY +++++L
Sbjct: 259 SSIFRDFKVSVSGKYPKYESSWMEL 283
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 181 AFLNSKALSAANNV--FVRDYATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEI 351
+ +N +++ NN F Y E L+PL L+ ++ G T + D++LD +
Sbjct: 2 SIVNILSVNVLNNPAKFSDPYKFEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTL 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,392
Number of Sequences: 5004
Number of extensions: 37883
Number of successful extensions: 118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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