Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f20
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0025 + 6183328-6186127,6186265-6186623 32 0.25
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 32 0.34
01_06_0953 + 33311347-33312651 31 0.44
11_05_0090 + 18979316-18981070 29 2.4
02_04_0066 + 19408431-19408865,19410540-19410620 29 3.1
01_05_0801 + 25353708-25353914,25354307-25354429,25355035-253552... 29 3.1
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821 29 3.1
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665... 28 4.1
02_05_0090 - 25742533-25744557 28 4.1
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 28 5.5
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 28 5.5
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 28 5.5
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 27 7.2
08_02_1364 - 26415278-26415319,26415399-26415518,26415739-264158... 27 7.2
03_01_0266 - 2057354-2057638,2057762-2058022,2058342-2058778,205... 27 7.2
12_01_0130 + 977181-977828 27 9.6
02_01_0061 + 442288-442411,442445-445498,445630-446000 27 9.6
01_06_1740 - 39575614-39576981 27 9.6
>02_02_0025 + 6183328-6186127,6186265-6186623
Length = 1052
Score = 32.3 bits (70), Expect = 0.25
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -2
Query: 237 IISYKNIVSST*GFRVEECTGFGSF 163
IISYK+IV +T GF E G GSF
Sbjct: 735 IISYKDIVQATKGFSTENLVGSGSF 759
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +1
Query: 286 DSEVRRYGRITKRDIDEVLDEIQSKNDITSSQSLLVIRCCGELVP 420
D ++ R+ R K+ E D++ S D++ ++SLL++RC + +P
Sbjct: 602 DEDIFRFRRRRKKGEGEGQDDVLSSVDLSCARSLLMLRCIEKPLP 646
>01_06_0953 + 33311347-33312651
Length = 434
Score = 31.5 bits (68), Expect = 0.44
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 454 QKIWSVLTERGIAMDISHYNALLR 525
+K+W ++TER + D +YNA LR
Sbjct: 254 EKVWEMITERNMVPDAKNYNAKLR 277
>11_05_0090 + 18979316-18981070
Length = 584
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 205 SAANNVFVRDYATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEI 351
S N V+ D ++ LD ++ + RR G TK+D+D+V +I
Sbjct: 429 STKNGVYAHDLLRERRRADLDESARRF-ARRRRRGSSTKKDLDDVSGDI 476
>02_04_0066 + 19408431-19408865,19410540-19410620
Length = 171
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 231 SYKNIVSST*GFRVEECTGFGSFHRI 154
SYK++ +T GF E GFG F R+
Sbjct: 118 SYKDMFRATNGFSYERLLGFGGFGRV 143
>01_05_0801 + 25353708-25353914,25354307-25354429,25355035-25355205,
25355303-25355392,25355497-25355583,25355664-25355719,
25355812-25355905,25356032-25356144,25356211-25356283,
25356603-25356683,25356865-25356951,25357031-25357135,
25357279-25357385,25357481-25357541,25357931-25358158,
25359720-25360677,25360816-25360997,25361237-25361326,
25361422-25361709,25361844-25362056,25362560-25362784
Length = 1212
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 265 DPLLQKLDSEVRRYGRITKRDIDEVLDEIQS-KNDITSSQSLLVIR 399
+ LLQK + E+R+ ++ +R +++DE Q ++++ S S L R
Sbjct: 872 EQLLQKYNEEIRKMQQLAQRHSQKIIDENQKLRSELESKMSELNTR 917
>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
Length = 998
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 331 DEVLDEIQSKNDITSSQSLLVIRCCGELVP 420
DE D++ S D++ +SLL++RC + +P
Sbjct: 604 DEEQDDVLSSGDLSCVRSLLMLRCIEKPIP 633
>11_04_0071 -
13165019-13165082,13165345-13165428,13166325-13166524,
13166756-13170655
Length = 1415
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 355 SKNDITSSQSLLVIRCCGELVPEELPEQRTL 447
S +D T S+ ++ C ELV + PE RTL
Sbjct: 868 SSDDWTGSEKHIIFPCLEELVIRDCPELRTL 898
>02_05_0090 - 25742533-25744557
Length = 674
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 231 SYKNIVSST*GFRVEECTGFGSFHRI 154
SYK++ +T GF E GFG F R+
Sbjct: 346 SYKDLFRATNGFSDERLLGFGGFGRV 371
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 249 LCCCIISYKNIVSST*GFRVEECTGFGSFHRI 154
+C ++SY+ IV +T F + G GSF ++
Sbjct: 732 ICHRLVSYQEIVRATENFNEDNLLGVGSFGKV 763
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 249 LCCCIISYKNIVSST*GFRVEECTGFGSFHRI 154
+C ++SY+ IV +T F + G GSF ++
Sbjct: 677 ICHRLVSYQEIVRATENFNEDNLLGVGSFGKV 708
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 442 TLLVQKIWSVLTERGIAMDISHYNALLRVYIE 537
T +K++ +T G+AM+ YNA+L V ++
Sbjct: 161 TATARKVFDQMTRAGVAMNTHVYNAMLHVCLK 192
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 139 RTLILNSVKTAEASAFLNSKALSAANNVFVRDYATT---KKTESLDPLLQKLDSEVRRYG 309
RT + +S +T +A NS NNVF + + T K ES L+ S + R
Sbjct: 1012 RTKLTDSEETCQAHLANNSALSDEKNNVFSQLESVTVVMKALESKHADLEDKSSSLSREM 1071
Query: 310 RITKRDIDEVLDEIQSKND 366
+ + E+ D+++ K++
Sbjct: 1072 NLAYDQVRELQDQLRVKDE 1090
>08_02_1364 -
26415278-26415319,26415399-26415518,26415739-26415825,
26416273-26416443,26416535-26416738
Length = 207
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 202 LSAANNVFVRDYATTKKTESLDPLLQKLDSEVRR--YGRITKRDIDEVLDE 348
L AA+ VRD LDPLL L +RR +G I K ++ ++ E
Sbjct: 46 LDAADRAVVRDMLHLASDADLDPLLVCLRVLIRRCVHGNIGKDEVAKLFPE 96
>03_01_0266 -
2057354-2057638,2057762-2058022,2058342-2058778,
2058889-2059213
Length = 435
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Frame = +1
Query: 94 LLRSTKFVRYFTGA-ARTL-ILNSVKTAEASAFLNSKALSAANNVFVRDYATTKKTESLD 267
+L FV +G AR L +L+ + + S KA+ N FVR T + L+
Sbjct: 76 ILCDKSFVARRSGLPARDLRVLSPLLSRSPSILAREKAM-VINLEFVRAIVTADEVLVLE 134
Query: 268 PLLQKL---DSEVRRYGRITKRDIDEVLDEIQSKN 363
PL Q++ ++R++ + D+D+V + ++N
Sbjct: 135 PLAQEVLPFVEKLRKHFPLKSLDVDDVSTHMHTEN 169
>12_01_0130 + 977181-977828
Length = 215
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 64 VPNQITVMSSLLRSTKFVRYFTGAARTLILNSVKTAEASAFLNSKALSAANN 219
V ++ T + + S + F A TL+L ++ A + + AL AANN
Sbjct: 77 VNSRFTSTADNIASAPVLPSFASARNTLVLKELRNANSVQVQSETALVAANN 128
>02_01_0061 + 442288-442411,442445-445498,445630-446000
Length = 1182
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 234 ISYKNIVSST*GFRVEECTGFGSFHRIQN 148
ISY++I +T GF G GSF + N
Sbjct: 861 ISYEDIAKATDGFSPTNLVGLGSFGAVYN 889
>01_06_1740 - 39575614-39576981
Length = 455
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 276 KQRVKAFCFLCCCIISYKNIVS 211
K+R AFCF CCI+ + +++
Sbjct: 261 KRRPVAFCFTACCILFWLLVIA 282
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,902,755
Number of Sequences: 37544
Number of extensions: 210818
Number of successful extensions: 695
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -