Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f20
(541 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC130285-1|AAI30286.1| 1394|Homo sapiens leucine-rich PPR-motif ... 87 5e-17
BC050311-1|AAH50311.1| 1394|Homo sapiens leucine-rich PPR-motif ... 87 5e-17
BC026034-1|AAH26034.1| 531|Homo sapiens LRPPRC protein protein. 87 5e-17
AY289212-1|AAP41922.1| 1394|Homo sapiens leucine-rich PPR motif-... 87 5e-17
AK125781-1|BAC86287.1| 1394|Homo sapiens protein ( Homo sapiens ... 87 5e-17
AC127379-1|AAY24043.1| 549|Homo sapiens unknown protein. 87 5e-17
M92439-1|AAA67549.1| 1273|Homo sapiens leucine-rich PPR-motif co... 59 1e-08
>BC130285-1|AAI30286.1| 1394|Homo sapiens leucine-rich PPR-motif
containing protein.
Length = 1394
Score = 86.6 bits (205), Expect = 5e-17
Identities = 40/102 (39%), Positives = 62/102 (60%)
Frame = +1
Query: 235 YATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEIQSKNDITSSQSLLVIRCCGEL 414
+++ K + D L +LD VRR GRI K+ + +V ++ + S +LL++R CG L
Sbjct: 74 FSSRKISNQFDWALMRLDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSL 133
Query: 415 VPEELPEQRTLLVQKIWSVLTERGIAMDISHYNALLRVYIEN 540
+PE E+RT +IW L + G D+SHYNALL+VY++N
Sbjct: 134 LPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQN 175
>BC050311-1|AAH50311.1| 1394|Homo sapiens leucine-rich PPR-motif
containing protein.
Length = 1394
Score = 86.6 bits (205), Expect = 5e-17
Identities = 40/102 (39%), Positives = 62/102 (60%)
Frame = +1
Query: 235 YATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEIQSKNDITSSQSLLVIRCCGEL 414
+++ K + D L +LD VRR GRI K+ + +V ++ + S +LL++R CG L
Sbjct: 74 FSSRKISNQFDWALMRLDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSL 133
Query: 415 VPEELPEQRTLLVQKIWSVLTERGIAMDISHYNALLRVYIEN 540
+PE E+RT +IW L + G D+SHYNALL+VY++N
Sbjct: 134 LPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQN 175
>BC026034-1|AAH26034.1| 531|Homo sapiens LRPPRC protein protein.
Length = 531
Score = 86.6 bits (205), Expect = 5e-17
Identities = 40/102 (39%), Positives = 62/102 (60%)
Frame = +1
Query: 235 YATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEIQSKNDITSSQSLLVIRCCGEL 414
+++ K + D L +LD VRR GRI K+ + +V ++ + S +LL++R CG L
Sbjct: 74 FSSRKISNQFDWALMRLDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSL 133
Query: 415 VPEELPEQRTLLVQKIWSVLTERGIAMDISHYNALLRVYIEN 540
+PE E+RT +IW L + G D+SHYNALL+VY++N
Sbjct: 134 LPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQN 175
>AY289212-1|AAP41922.1| 1394|Homo sapiens leucine-rich PPR
motif-containing protein protein.
Length = 1394
Score = 86.6 bits (205), Expect = 5e-17
Identities = 40/102 (39%), Positives = 62/102 (60%)
Frame = +1
Query: 235 YATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEIQSKNDITSSQSLLVIRCCGEL 414
+++ K + D L +LD VRR GRI K+ + +V ++ + S +LL++R CG L
Sbjct: 74 FSSRKISNQFDWALMRLDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSL 133
Query: 415 VPEELPEQRTLLVQKIWSVLTERGIAMDISHYNALLRVYIEN 540
+PE E+RT +IW L + G D+SHYNALL+VY++N
Sbjct: 134 LPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQN 175
>AK125781-1|BAC86287.1| 1394|Homo sapiens protein ( Homo sapiens
cDNA FLJ43793 fis, clone TESTI4000014, highly similar
to 130 kDa leucine-rich protein. ).
Length = 1394
Score = 86.6 bits (205), Expect = 5e-17
Identities = 40/102 (39%), Positives = 62/102 (60%)
Frame = +1
Query: 235 YATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEIQSKNDITSSQSLLVIRCCGEL 414
+++ K + D L +LD VRR GRI K+ + +V ++ + S +LL++R CG L
Sbjct: 74 FSSRKISNQFDWALMRLDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSL 133
Query: 415 VPEELPEQRTLLVQKIWSVLTERGIAMDISHYNALLRVYIEN 540
+PE E+RT +IW L + G D+SHYNALL+VY++N
Sbjct: 134 LPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQN 175
>AC127379-1|AAY24043.1| 549|Homo sapiens unknown protein.
Length = 549
Score = 86.6 bits (205), Expect = 5e-17
Identities = 40/102 (39%), Positives = 62/102 (60%)
Frame = +1
Query: 235 YATTKKTESLDPLLQKLDSEVRRYGRITKRDIDEVLDEIQSKNDITSSQSLLVIRCCGEL 414
+++ K + D L +LD VRR GRI K+ + +V ++ + S +LL++R CG L
Sbjct: 74 FSSRKISNQFDWALMRLDLSVRRTGRIPKKLLQKVFNDTCRSGGLGGSHALLLLRSCGSL 133
Query: 415 VPEELPEQRTLLVQKIWSVLTERGIAMDISHYNALLRVYIEN 540
+PE E+RT +IW L + G D+SHYNALL+VY++N
Sbjct: 134 LPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQN 175
>M92439-1|AAA67549.1| 1273|Homo sapiens leucine-rich PPR-motif
containing protein protein.
Length = 1273
Score = 58.8 bits (136), Expect = 1e-08
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +1
Query: 394 IRCCGELVPEELPEQRTLLVQKIWSVLTERGIAMDISHYNALLRVYIEN 540
+R CG L+PE E+RT +IW L + G D+SHYNALL+VY++N
Sbjct: 6 LRSCGSLLPELKLEERTEFAHRIWDTLQKLGAVYDVSHYNALLKVYLQN 54
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,100,910
Number of Sequences: 237096
Number of extensions: 1246186
Number of successful extensions: 4080
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4080
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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