Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f19
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc... 254 9e-69
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 29 0.36
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 28 0.82
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.4
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 3.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 3.3
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 25 5.8
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 5.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 5.8
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.7
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc... 25 7.7
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 25 7.7
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 25 7.7
>SPCC1919.09 |tif6||translation initiation factor
eIF6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 254 bits (621), Expect = 9e-69
Identities = 112/150 (74%), Positives = 137/150 (91%)
Frame = +2
Query: 113 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 292
MA+R QFEN+NE+GVFS LTN+Y LVA+GGSENFYSVFEAEL + +PV+H ++GG RIIG
Sbjct: 1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIG 60
Query: 293 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 472
R+T GN+ GLLVPSSTTD ELQH+RNSLP+ VK+QRV+ERLSALGN++ACNDYVALVHPD
Sbjct: 61 RLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPD 120
Query: 473 LDKDTEEILADTLNVEVFRQTIAGNVLVGS 562
++++TEEI+AD L+VEVFRQT+AGNVL GS
Sbjct: 121 IERETEEIIADVLDVEVFRQTVAGNVLTGS 150
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 29.5 bits (63), Expect = 0.36
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 332 SSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHP 469
SST ++ I + +N L +V +R S G V +C+D+ LVHP
Sbjct: 145 SSTISSDACFIASIETKN-PLAKVWQRTSPQGTVSSCDDFSYLVHP 189
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 28.3 bits (60), Expect = 0.82
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 239 AETIPVIHASVGGCRIIGRMT-VGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERL 415
++ IP I AS+ R+ MT +G + L++P++ + ++NS+ ++L+R +RL
Sbjct: 324 SQKIPAIKASLSQ-RVSSVMTELGVSSRLIMPTAKNFEKFVELQNSIVSLLELKRKVDRL 382
Query: 416 S 418
S
Sbjct: 383 S 383
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 1.4
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = -1
Query: 525 NTSTFNVSANISSVSLSKSGCTSAT*SLQAMTLPRALSRSSTRCNFTFSGRLFLMCCNSV 346
NTS+F S+ ISS SLS S T + + + P +S SS+ +FT S L S
Sbjct: 224 NTSSFLPSSVISSASLSSSS-VLPTSIITSTSTPVTVS-SSSLSSFTPSYSTNLTTTGST 281
Query: 345 SVVEDGT--KRPFLFPTVILPMIRQPPTLACITGMVSANSASNTL 217
+ T PF + ++P P +++ T S++S + TL
Sbjct: 282 TTTGSATVSSSPFYSNSSVIP-TSVPSSVSSFTS--SSSSYTTTL 323
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 3.3
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = -1
Query: 561 EPTSTFPAIVCLNTSTFNVSANISSVSLSKSGCTSAT*SLQAMTLPRALSRSSTRCNFT 385
+P+S+ + TST + S+ +SS +L+ S ++ + + ++ +S S + +FT
Sbjct: 109 DPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFT 167
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 3.3
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -1
Query: 561 EPTSTFPAIVCLNTSTFNVSANISSVSLSKSGCTSAT*SLQAMTLPRALSRSST 400
E T+++ + + + +ST S SSVS + S S+ S T P+ S SST
Sbjct: 912 EGTTSYSSNITVTSSTLKPSLT-SSVSTASSYIASSASSNTLSTEPKTFSSSST 964
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 25.4 bits (53), Expect = 5.8
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +2
Query: 41 NPREESHHIVKYIIREK-VKRKTKIMAVRVQFE---NNN 145
NPRE +I Y++ EK + + IM R+QF+ NNN
Sbjct: 643 NPREVLENIRDYLVTEKPLSFEECIMWARLQFDKFFNNN 681
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 302 VGNKNGLLVPSSTTDTELQHIRNS-LPENVKLQRVEERLSALGNVIACN 445
VGN + L+ T TELQ I + L L L LG+ CN
Sbjct: 944 VGNNDNLIDSIKTPHTELQKITDHVLKGTTSLANHTNELLGLGDESLCN 992
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 5.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 339 VEDGTKRPFLFPTVILPMIRQPPTLACITGMVSANSASNTL*KFSEPPIA 190
++DGT P V LP + PT+ +G++ SN++ F PP A
Sbjct: 409 LKDGTTNTLQIPAVRLPSLPSSPTIKNPSGLLL--KRSNSI-DFPTPPKA 455
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 262 CECWRLPNHR*NDRREQERSLSSI 333
CE WR N DR E+ LSS+
Sbjct: 271 CEVWRANNTTVEDREVAEKLLSSL 294
>SPBC26H8.05c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 311 KNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNV 433
+NG L+P S Q +R+ L E +Q + ++ G++
Sbjct: 14 ENGRLIPESNVVELCQRVRDILIEESNIQWISSPVTICGDI 54
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 245 SPLIQLRTRCKNSPNLQSRQGS 180
SP+++LRTR N N SR+ +
Sbjct: 593 SPVLRLRTRDSNPSNTDSRESN 614
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +2
Query: 236 LAETIPVIHASVGGCRIIGRMTVGNKNGLLV 328
+ E +PV+H ++GG ++ + V + NG ++
Sbjct: 427 VGEVVPVLHYTMGGVQVDTQSRVLSTNGNVI 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,132
Number of Sequences: 5004
Number of extensions: 49516
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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