Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f19
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1443 + 26575172-26575181,26575709-26575805,26575900-265759... 247 5e-66
01_01_1232 - 9966448-9966708,9966818-9966928,9967142-9967176,996... 140 7e-34
04_04_0108 - 22830485-22830706,22830817-22830954,22831091-228313... 32 0.27
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 30 1.1
10_08_0036 + 14325793-14326457,14326610-14328035 29 2.6
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 29 3.4
04_03_0916 + 20794240-20794246,20794585-20796545 28 4.5
11_01_0438 - 3349506-3351239 28 5.9
04_03_0914 + 20788103-20789642,20790036-20790529 28 5.9
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386... 27 7.8
>07_03_1443 +
26575172-26575181,26575709-26575805,26575900-26575985,
26576073-26576117,26576788-26576918,26577016-26577126,
26577215-26577472
Length = 245
Score = 247 bits (604), Expect = 5e-66
Identities = 113/150 (75%), Positives = 131/150 (87%)
Frame = +2
Query: 113 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 292
MA R+QFENN EVGVFSKLTN YCLVAIGGSENFYS FE+ELA+ IPV+ S+GG RIIG
Sbjct: 1 MATRIQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPVVKTSIGGTRIIG 60
Query: 293 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 472
R+ VGNKNGLL+P +TTD ELQH+RN LP+ V +QR++ERLSALGN +ACND+VAL HPD
Sbjct: 61 RLCVGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIDERLSALGNCVACNDHVALTHPD 120
Query: 473 LDKDTEEILADTLNVEVFRQTIAGNVLVGS 562
LDK TEE++AD L VEVFRQTIAGN+LVGS
Sbjct: 121 LDKATEELIADVLGVEVFRQTIAGNILVGS 150
>01_01_1232 -
9966448-9966708,9966818-9966928,9967142-9967176,
9967469-9967599,9967683-9967779,9967907-9967916
Length = 214
Score = 140 bits (339), Expect = 7e-34
Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 12/147 (8%)
Frame = +2
Query: 113 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 292
MA RV+FEN++E+GVF++LTN YC++ GG+ENF+SVFE+ELA+ +PV+ S+GG RIIG
Sbjct: 1 MASRVRFENSSEIGVFARLTNAYCVLPDGGAENFFSVFESELADVVPVVRTSIGGTRIIG 60
Query: 293 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEE-------RLSALGNVI----- 436
RM VGNKNGLL+P +TTD ELQH++NSLP+ + + + R + GN++
Sbjct: 61 RMCVGNKNGLLLPHTTTDQELQHLKNSLPDQGTEEIISDVLGVEVFRQTIAGNILVGSFC 120
Query: 437 ACNDYVALVHPDLDKDTEEILADTLNV 517
A ++ LVHP + + L+ L V
Sbjct: 121 AFSNKGGLVHPQTSVEDQAELSTLLEV 147
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +2
Query: 476 DKDTEEILADTLNVEVFRQTIAGNVLVGS 562
D+ TEEI++D L VEVFRQTIAGN+LVGS
Sbjct: 90 DQGTEEIISDVLGVEVFRQTIAGNILVGS 118
>04_04_0108 -
22830485-22830706,22830817-22830954,22831091-22831355,
22831490-22831725,22831906-22832421,22834960-22835300,
22835453-22835459
Length = 574
Score = 32.3 bits (70), Expect = 0.27
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Frame = +2
Query: 140 NNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIGRMTVGNKNG 319
NNE+ FS NT NF + L+ P I G + VG G
Sbjct: 413 NNEMDDFSMPANTSANSPPPAPANFVRPLKRPLSSMTPTIILKDGNLKA----AVGASGG 468
Query: 320 LLVPSSTTDTELQH-IRNSLP-ENVKLQRVEERLSALGNVIACNDYVALV--HPDLDKDT 487
++P+ T + L H ++N P +V RV +L + NV+ ++ + H +LD T
Sbjct: 469 SMIPAGTMEVLLNHFVKNMDPLSSVMAPRVYHQL--IPNVVQYENWTTVTGDHFELDAAT 526
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/86 (23%), Positives = 41/86 (47%)
Frame = +2
Query: 53 ESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEA 232
E+HH++ YII + K+ + ++ E F + + +C++A + N S+F+
Sbjct: 241 EAHHLI-YIIGWSLYHPVKLDGL--MHTHDEEARKFFRHSGVHCVLAPRYASNKLSIFKQ 297
Query: 233 ELAETIPVIHASVGGCRIIGRMTVGN 310
++ T+ H C I+ +GN
Sbjct: 298 QVVGTLFTHHQK---CVIVDTQVIGN 320
>10_08_0036 + 14325793-14326457,14326610-14328035
Length = 696
Score = 29.1 bits (62), Expect = 2.6
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = +2
Query: 182 CLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIGRMTVGNKNGLLVPSSTTDTELQH 361
CL A G + L I ++ ++ R IG T N + + V + D E Q
Sbjct: 408 CLSASGDHQLHRLDSRQGLLAGIAQVNKAIKDARHIGDRT-SNIDVIKVQAGNLDEEAQR 466
Query: 362 IRNSLPENVKLQRVEERLSALGN----VIACNDYVALVHPDLDKDTEEILADTLNVE 520
I+ +P N + VE LGN + A +Y ++ D D+ EI+ +N E
Sbjct: 467 IQELVPSNFNIIGVEVMHPQLGNRSYAIGAQQNYESMKTYLKDADSFEIVIAFVNSE 523
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +2
Query: 50 EESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFE 229
E+ H +++ R K++ + E N VFS T+C + I S N + +
Sbjct: 475 EQQRHTFQFVSRNKLEVPVRHKKAPDALEMNTNSVVFSPKEQTHCNLEI-FSPNSKKIID 533
Query: 230 AELAETIPVIHA-SVGGCRIIGRMTVGNKNGLLVPSST 340
A E+ + +G C++ + ++ + PS T
Sbjct: 534 ASHYESYASLQQHPLGQCQVPNYWSAAGQSSFVHPSIT 571
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 266 SVGGCRIIGRMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIAC 442
S GGC + + + SS TD E HIR + E + Q V +R +G + AC
Sbjct: 244 SNGGCSVWHNELLNIRKNQCTGSSNTDGETFHIRLAAQE-LYSQEVNKRGMVIGVLSAC 301
>11_01_0438 - 3349506-3351239
Length = 577
Score = 27.9 bits (59), Expect = 5.9
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +2
Query: 224 FEAELAETIPVIHASVGGCRIIGRMTVGNKN---GLLVPSSTTDTELQHIRNSLPE--NV 388
FE A TIP ++ S +GR+ VG N G + + T TEL + LP +
Sbjct: 400 FEVLAASTIPRMYHSSATLDTLGRVLVGGSNPHVGYVFDNVTYPTELS-LEAFLPPYFDA 458
Query: 389 KLQRVEERLSALGNVIACNDYVAL 460
+L V RL A + + + A+
Sbjct: 459 RLDGVRPRLVAAPSEVGYGEAAAV 482
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 266 SVGGCRIIGRMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACN 445
S GGC I + + SS TD E HIR + E + ++ +R+ +G VI+ +
Sbjct: 398 SNGGCSIWHNELLNIRKSQCSDSSNTDGEALHIRLA-AEELYSKKANKRVMVIGVVISAS 456
>04_04_0861 +
28836544-28836609,28838191-28838264,28838551-28838671,
28838832-28839143,28839241-28839345,28839447-28839901,
28840116-28840417,28840589-28840767,28841256-28841446,
28841595-28841728,28841875-28842113
Length = 725
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -1
Query: 408 SSTRCNFTFSGRLFLMCCNSVS-VVEDGT--KRPFLFPTVILPMIRQPPTLACITGMVSA 238
SS T++G L +++ VV D T +L P ++L + PP + CI +V+
Sbjct: 658 SSRLARGTYNGGLLSTEAGTLARVVADATITAAGYLGPDLLLNITLLPPLVICIASLVAT 717
Query: 237 NSASNTL 217
NTL
Sbjct: 718 FCTYNTL 724
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,401,245
Number of Sequences: 37544
Number of extensions: 317977
Number of successful extensions: 848
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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