Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f19
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical pr...   213   1e-55
Z49909-5|CAD59140.1|  594|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell death-re...    28   4.0  
AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical p...    27   9.3  

>Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical
           protein C47B2.5 protein.
          Length = 246

 Score =  213 bits (519), Expect = 1e-55
 Identities = 93/150 (62%), Positives = 126/150 (84%)
 Frame = +2

Query: 113 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 292
           MA+RV +E +N+VGVF  LTN+YCLV +GG++NFYS+ EAEL++ IPV+H S+   RI+G
Sbjct: 1   MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVG 60

Query: 293 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 472
           R+TVGN++GLLVP++TTD ELQH+RNSLP+ V ++RV+ERLSALGNVIACND+VA+VH +
Sbjct: 61  RLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAE 120

Query: 473 LDKDTEEILADTLNVEVFRQTIAGNVLVGS 562
           +  +TE+ L + L VEVFR ++A N LVGS
Sbjct: 121 ISAETEQALVEVLKVEVFRVSLAQNSLVGS 150


>Z49909-5|CAD59140.1|  594|Caenorhabditis elegans Hypothetical
           protein C14A4.4b protein.
          Length = 594

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 290 GRMTVGNKNGLLVPSSTTDTELQHIRNSLPE-NVKLQRVEERLSALGNVIACNDYVALVH 466
           G   V   NGL  P +  D EL    NS P  N  ++R E+RL+AL N +  +   A+  
Sbjct: 40  GAGLVRESNGL--PKAGADYELY---NSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94

Query: 467 PDLDKDTE 490
           PD+    E
Sbjct: 95  PDVGSSVE 102


>Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical
           protein C14A4.4a protein.
          Length = 876

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 290 GRMTVGNKNGLLVPSSTTDTELQHIRNSLPE-NVKLQRVEERLSALGNVIACNDYVALVH 466
           G   V   NGL  P +  D EL    NS P  N  ++R E+RL+AL N +  +   A+  
Sbjct: 40  GAGLVRESNGL--PKAGADYELY---NSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94

Query: 467 PDLDKDTE 490
           PD+    E
Sbjct: 95  PDVGSSVE 102


>AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell
           death-related nuclease 3 protein.
          Length = 876

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 290 GRMTVGNKNGLLVPSSTTDTELQHIRNSLPE-NVKLQRVEERLSALGNVIACNDYVALVH 466
           G   V   NGL  P +  D EL    NS P  N  ++R E+RL+AL N +  +   A+  
Sbjct: 40  GAGLVRESNGL--PKAGADYELY---NSYPTFNTFMKRSEQRLNALMNKVTKSIGCAMRV 94

Query: 467 PDLDKDTE 490
           PD+    E
Sbjct: 95  PDVGSSVE 102


>AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39C12A.8 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 374 LPENVKLQRVEERLSALGNVIACNDYVALVHPDLDKDTEEI 496
           +P++ K    +E+   +GN+  C D+  +++ D     +EI
Sbjct: 3   IPKSAKSDYTKEQKDLVGNICQCKDFYKILNVDKKASPDEI 43


>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
           protein C10C6.6 protein.
          Length = 1178

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 457 CYIVVTGYDVTEGTKPFLHAL*FHVLRQTVSNVL*FC 347
           CY++ TG++ ++G    L  + F V + T +N+  FC
Sbjct: 362 CYVIRTGFNTSQG--KLLRTIMFGVKKATANNLETFC 396


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
           protein F52B5.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 320 LLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVI 436
           ++ P S    ELQ +RNSLP +    +V + +S+   VI
Sbjct: 163 VIPPKSKCSKELQKVRNSLPASKYCDQVLKSISSCNVVI 201


>U29244-12|AAC71093.3|  604|Caenorhabditis elegans Hypothetical
           protein ZK1248.13 protein.
          Length = 604

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 359 VVILCPWSKMELRDRSCSL 303
           + +LC W K  LRD +C L
Sbjct: 200 ITVLCDWVKQFLRDHACHL 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,406,605
Number of Sequences: 27780
Number of extensions: 280915
Number of successful extensions: 726
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)