Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f19
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              25   0.70 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.8  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   2.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.5  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 332 SSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIAC 442
           S+ T  EL+ +R+S    +KL   EE     G  +AC
Sbjct: 38  SNMTFHELKKLRDSSEARIKLINEEENFRNYGCFLAC 74


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 454  STCTS*LRQRHRRNISRHIKRGSIQTNNSGKRTCW 558
            +T +S   + HRR +S HI        ++ +RT W
Sbjct: 1316 TTVSSGSSEDHRRPLSEHIYSSIDSDYSTLERTAW 1350



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = -2

Query: 281 GSLQHSHVSLGWSPLIQLRTRCKNSPNLQSRQGSMC 174
           G+  + + S+ W P I  +T  +  P +      MC
Sbjct: 679 GNPFNCNCSMDWLPGINNQTSTREYPRIMDLDNVMC 714


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 335 STTDTELQHIRNSLPENV 388
           ST D  L  IRN +PEN+
Sbjct: 182 STLDAILDIIRNMVPENL 199


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = +2

Query: 236 LAETIPVIHASVGGCRIIGRMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQ 397
           + +T    H    G R      + N+N +   +   + ELQ +R  L  N+  Q
Sbjct: 20  MCQTFTYSHGWTNGKRSTSLEELANRNAIQSDNVFANCELQKLRLLLQGNINNQ 73


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 425 GNVIACNDYVALVHPDLDKDTEE 493
           GN ++C +  +L++ + D  T+E
Sbjct: 102 GNALSCKETFSLLYYEFDVATKE 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,253
Number of Sequences: 438
Number of extensions: 3514
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)