Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f13
(174 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.027
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 0.58
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 25 1.0
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 1.3
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 25 1.8
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 1.8
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 24 3.1
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 23 4.1
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos... 23 4.1
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 23 4.1
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 23 4.1
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 23 5.4
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 23 5.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 23 5.4
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 23 5.4
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 23 5.4
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 23 7.1
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 23 7.1
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 23 7.1
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 23 7.1
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 7.1
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 22 9.4
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy... 22 9.4
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 22 9.4
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.027
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 121 QVLFVFGGHDLEVYSVVFQHGGK 53
+V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 0.58
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 12 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSST 167
VTP P S S PP +T T S P +++ S T + T +ST
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST 352
Score = 26.2 bits (55), Expect = 0.58
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 12 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSST 167
VTP P S S PP +T T S P +++ S T + T +ST
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST 406
Score = 25.4 bits (53), Expect = 1.0
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 18 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSST 167
P T + S P P T+ TS S PP NST + +T V + SST
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSST 313
Score = 24.2 bits (50), Expect = 2.3
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 3 LHSVTPKTKPARKSPGSLPPCW-KTTEYTSRSCPPKTNST 119
L++ TP T P S S W TT T S T+ST
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSST 637
Score = 23.8 bits (49), Expect = 3.1
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 12 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSST 167
+TP P S S+P P T+ + S P T ST S T + T +ST
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPPTGNST 298
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 9 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SS 128
S P T + + S+PP +T + + PP + S+ S+
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTST 369
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 1.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 166 VDDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGK 53
V+D I R + + + +V + GH+ E+YS+ F GK
Sbjct: 353 VEDQQI-RIWDIAQKRVYRLLTGHEQEIYSLDFSKDGK 389
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 100 GHDLEVYSVVFQHGGK 53
GH+ VYSV F GK
Sbjct: 456 GHEESVYSVAFSPDGK 471
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 145 RTFRVIELQVLFVFGGHDLEVYSVVFQ 65
R +RV + L+ GH L +YSV+++
Sbjct: 530 RIWRVSTGECLYHLRGHSLRIYSVLYE 556
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 1.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 11 GDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKL 127
G ++ +S SW F P N R+Y +Q+ +L
Sbjct: 69 GGEREGSSLTHSWTFQPGKHNQRLYSDNFQEAQRQWKRL 107
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +2
Query: 35 KKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRI 160
+++ W + + R ++ ++ED+Q+L L K +D +I
Sbjct: 77 QEIPWNYQDITIELRARIRLFASEDRQWLTL-TYKTKTDSKI 117
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 94 DLEVYSVVFQHGGKLPGDFLAGFVFG 17
DLE +V Q+ G G+FL G FG
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFG 436
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 23.4 bits (48), Expect = 4.1
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = -2
Query: 35 CWFCLWS 15
CW CLWS
Sbjct: 125 CWICLWS 131
>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +2
Query: 32 SKKVSWKFTPVL-ENNRVY 85
+KK W F PVL +N R+Y
Sbjct: 105 NKKAFWVFDPVLGDNGRLY 123
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +2
Query: 44 SWKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 172
+WK ++E R+++ KQYL ++ + D ++ D
Sbjct: 538 TWKSISLVERARIHYLTAFKPPKQYLPKCSSPKDNRDLKVFAD 580
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 87 KYTLLFSNTGVNFQETFLLVLSLESPNAI 1
K +L N GVN++E ++LSL + N +
Sbjct: 877 KISLKGLNEGVNYEEFLDMLLSLPAENNV 905
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 65 LENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 172
+EN + +++ ++Y KLDN + D+ +Y D
Sbjct: 194 IENFGISIHVITKNFREYYKLDNIEHVKDE-TLYSD 228
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -2
Query: 29 FCLWSHR 9
FCLWSHR
Sbjct: 177 FCLWSHR 183
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 9 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPP 104
+ TPK P+ +LPP K T+ P
Sbjct: 436 TATPKRSPSATPTSALPPIGKFAPPTTAKAQP 467
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 147 LEPFVLSSFRYCLSSVDMILKYTLLFSNTGVNF 49
L PFV+S F Y L Y+L + T + F
Sbjct: 275 LVPFVVSCFTYFLGDGIEYALYSLFITTTVLGF 307
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 27 KPARKSPGSLPPCWKTTEYTSRS 95
KPARK+P +PP TT+ + S
Sbjct: 758 KPARKTPLLIPPPDFTTDQLTDS 780
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 71 NNRVYFKIMSTEDKQYLKLDNTKGSSDDRII 163
+NR+Y+ I E K+ + + + + D+R I
Sbjct: 222 HNRLYYAIKVLEKKKIVDMKQIEHTCDERYI 252
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 23 DKTSKKVSWKFTPVLENNRVYF 88
D+ K +S +FTP++E YF
Sbjct: 193 DEADKLLSPEFTPIIEQLLSYF 214
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 51 SLPPCWKTTEYTSRSCP 101
++P WKTT Y S P
Sbjct: 86 AIPVWWKTTHYERSSLP 102
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 9 SVTPKTKPARKSPGSLPP 62
S P T +KSP LPP
Sbjct: 325 STEPSTPNVQKSPNRLPP 342
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +3
Query: 3 LHSVTPKTKPARKSP-GSLP 59
L +TP T PA K+P SLP
Sbjct: 43 LSDITPDTPPAFKTPYSSLP 62
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 3 LHSVTPKTKPARKSPG--SLPPCWKTTEYTSRSCPPK 107
L++ TP+ P +LP + T + +CPPK
Sbjct: 169 LYNQTPEISDLTSPPPPINLPLSYSATGAATSNCPPK 205
>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 3 LHSVTPKTKPARKSPGSLPP 62
L S PK +PAR++ S P
Sbjct: 129 LRSKDPKVRPARRAASSYVP 148
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 22.2 bits (45), Expect = 9.4
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -2
Query: 53 TSRRLSCWFCLW 18
TS+++ C FC W
Sbjct: 1160 TSKKVPCTFCCW 1171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,283
Number of Sequences: 5004
Number of extensions: 12857
Number of successful extensions: 75
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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