Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f13
(174 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 30 0.19
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical pr... 26 3.1
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 26 3.1
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 26 3.1
Z81146-3|CAB03524.1| 496|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical pr... 26 4.1
AC006726-2|AAF60452.1| 86|Caenorhabditis elegans Hypothetical ... 26 4.1
Z35663-2|CAA84735.2| 335|Caenorhabditis elegans Hypothetical pr... 25 5.4
U88173-11|AAK21390.1| 329|Caenorhabditis elegans Hypothetical p... 25 5.4
AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical... 25 5.4
AL023835-5|CAA19490.1| 471|Caenorhabditis elegans Hypothetical ... 25 5.4
AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA ... 25 5.4
Z81486-9|CAB03991.1| 430|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z81486-5|CAB03987.1| 570|Caenorhabditis elegans Hypothetical pr... 25 7.2
U40800-4|AAO91742.1| 763|Caenorhabditis elegans Hypothetical pr... 25 7.2
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 25 7.2
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 25 7.2
AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical ... 25 7.2
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr... 25 9.5
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st... 25 9.5
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st... 25 9.5
U41264-11|AAA82431.2| 550|Caenorhabditis elegans Hypothetical p... 25 9.5
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 25 9.5
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 25 9.5
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 25 9.5
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 25 9.5
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 30.3 bits (65), Expect = 0.19
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 18 PKTKPARKSPGSLPPCWKTTE--YTSRSCPPKTNST 119
PKT+P P ++P CW+ + PP+ N+T
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNT 453
>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical
protein F37D6.1 protein.
Length = 1227
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 145 RTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPG 44
R F +E+ + + G ++ HGGK+PG
Sbjct: 273 RVFEGLEMAITSIDGADRTNFIQLIEDHGGKVPG 306
>Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical
protein F56F3.1 protein.
Length = 761
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 16 LQRQNQQESLLEVYPRVGKQQSILQDHV-HRRQTVP 120
LQ +QQ LL+ + KQQ+ H+ H RQ P
Sbjct: 399 LQDPSQQAQLLQHLQKFAKQQAESGQHIHHHRQPTP 434
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +3
Query: 9 SVTPKTKPARKSPGSLPP-CWKTTEYTSRSCPP 104
SVTP +P P + PP T YT PP
Sbjct: 218 SVTPGGRPGSTPPATFPPGSVSTVRYTPGPTPP 250
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +3
Query: 9 SVTPKTKPARKSPGSLPP-CWKTTEYTSRSCPP 104
SVTP +P P + PP T YT PP
Sbjct: 141 SVTPGGRPGSTPPATFPPGSISTVRYTPGPTPP 173
>Z81146-3|CAB03524.1| 496|Caenorhabditis elegans Hypothetical
protein K10D11.5 protein.
Length = 496
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 22 RQNQQESLLEVYPRVGKQQSILQDHVHRRQTV 117
RQ S+L YP+ G+ + QD+ + + V
Sbjct: 223 RQYMSVSMLSPYPQTGRTMLVFQDYQNTKDVV 254
>Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical
protein C38D4.5 protein.
Length = 837
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 20 KDKTSKKVSWKFTPVLENNRVYFK-IMSTEDKQYL 121
K K SKK + TPV N+ + F IM ++ QYL
Sbjct: 785 KAKPSKKEETQATPVQSNSHLAFSMIMQSQIVQYL 819
>AC006726-2|AAF60452.1| 86|Caenorhabditis elegans Hypothetical
protein Y23B4A.2 protein.
Length = 86
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 40 SLLEVYPRVGKQQSILQDHVHRRQTV 117
+LL YPRVGK+ +IL ++ + +V
Sbjct: 39 ALLVPYPRVGKRSNILNNNSESQNSV 64
>Z35663-2|CAA84735.2| 335|Caenorhabditis elegans Hypothetical
protein T04A8.2 protein.
Length = 335
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -1
Query: 102 VDMILKYTLLFSNTGVNFQETFLLVLSLE 16
++++L YT+LF N+ + +F L+ S +
Sbjct: 45 LNILLLYTILFKNSEIYASSSFFLIYSTD 73
>U88173-11|AAK21390.1| 329|Caenorhabditis elegans Hypothetical
protein F46F11.8 protein.
Length = 329
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 15 TPKTKPARKSPGSLPPCWKTTEYTSRS 95
TP T PAR +P S+P + E+T+++
Sbjct: 144 TPST-PARAAPASVPSTSMSAEFTAKN 169
>AL132876-15|CAD21668.2| 722|Caenorhabditis elegans Hypothetical
protein Y105E8A.19 protein.
Length = 722
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 86 FKIMSTEDKQYLKLDNTKGSSDDRIIY 166
+ ++ D+QYLK+D G D R I+
Sbjct: 177 YPLLQALDEQYLKVDGQFGGVDQRKIF 203
>AL023835-5|CAA19490.1| 471|Caenorhabditis elegans Hypothetical
protein Y37A1B.5 protein.
Length = 471
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 23 DKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLK 124
DK ++K S P L ++R+Y + E K YL+
Sbjct: 85 DKPTEKRSHLIVPCLNSDRIYIINVENERKIYLE 118
>AB096636-1|BAC76736.1| 722|Caenorhabditis elegans tyrosyl-tRNA
synthetase (cytoplasmic)protein.
Length = 722
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 86 FKIMSTEDKQYLKLDNTKGSSDDRIIY 166
+ ++ D+QYLK+D G D R I+
Sbjct: 177 YPLLQALDEQYLKVDGQFGGVDQRKIF 203
>Z81486-9|CAB03991.1| 430|Caenorhabditis elegans Hypothetical
protein C53A5.11 protein.
Length = 430
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 44 SWKFTPVLENNRVYFKIMSTEDKQY 118
+WK P + R YFK+ +T + Y
Sbjct: 378 TWKDEPSMNTGRKYFKLHATNEAIY 402
>Z81486-5|CAB03987.1| 570|Caenorhabditis elegans Hypothetical
protein C53A5.6 protein.
Length = 570
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 44 SWKFTPVLENNRVYFKIMSTEDKQY 118
SW+ P L +R YF + ST + Y
Sbjct: 498 SWRDEPSLSKDRKYFTLHSTNEAIY 522
>U40800-4|AAO91742.1| 763|Caenorhabditis elegans Hypothetical
protein D2096.12 protein.
Length = 763
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 8 FGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQY 118
F ++ ++ +S P+ E ++Y KI STE K +
Sbjct: 297 FPTNRQSSTAMISPSLHPIPEIKKIYPKIPSTEHKSF 333
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 9 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 110
+ TP P R +P + T T + PPKT
Sbjct: 44 AATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKT 77
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 9 SVTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKT 110
+ TP P R +P + T T + PPKT
Sbjct: 173 AATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKT 206
>AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical
protein Y73C8C.8 protein.
Length = 946
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 9 SVTPKTKPARKSPGSLPPCWKTTEY 83
S P KP K + P C++ +EY
Sbjct: 585 SENPIAKPEEKQSNACPKCFRASEY 609
>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
protein.
Length = 1613
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 53 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 172
F P+ N + KI S+ DK+ +NT ++++ + GD
Sbjct: 146 FNPIAPRNEIE-KIESSYDKEEQSEENTSFFTNEKTLEGD 184
>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
b protein.
Length = 1558
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 53 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 172
F P+ N + KI S+ DK+ +NT ++++ + GD
Sbjct: 146 FNPIAPRNEIE-KIESSYDKEEQSEENTSFFTNEKTLEGD 184
>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
a protein.
Length = 1613
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 53 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 172
F P+ N + KI S+ DK+ +NT ++++ + GD
Sbjct: 146 FNPIAPRNEIE-KIESSYDKEEQSEENTSFFTNEKTLEGD 184
>U41264-11|AAA82431.2| 550|Caenorhabditis elegans Hypothetical
protein F10E7.1 protein.
Length = 550
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 35 KKVSWKFTPVLENNRVYF-KIMSTEDKQ 115
K W++ L+NN +YF K + +D+Q
Sbjct: 469 KPKPWEYESSLQNNHLYFEKTVKLQDEQ 496
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 53 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 172
F P+ N + KI S+ DK+ +NT ++++ + GD
Sbjct: 146 FNPIAPRNEIE-KIESSYDKEEQSEENTSFFTNEKTLEGD 184
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 37 ESLLEVYPRVGKQQSILQDHVHRRQTVPEA 126
E+ E+ P +GK++ ILQ + +PEA
Sbjct: 1876 ENSAEITPVLGKRKHILQIPFENLRVIPEA 1905
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 37 ESLLEVYPRVGKQQSILQDHVHRRQTVPEA 126
E+ E+ P +GK++ ILQ + +PEA
Sbjct: 1779 ENSAEITPVLGKRKHILQIPFENLRVIPEA 1808
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 37 ESLLEVYPRVGKQQSILQDHVHRRQTVPEA 126
E+ E+ P +GK++ ILQ + +PEA
Sbjct: 1790 ENSAEITPVLGKRKHILQIPFENLRVIPEA 1819
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,362,517
Number of Sequences: 27780
Number of extensions: 73928
Number of successful extensions: 311
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 38
effective length of database: 11,684,558
effective search space used: 222006602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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