Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f11
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    93   3e-20
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    87   2e-18
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    58   2e-09
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    55   8e-09
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    41   1e-04
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    31   0.11 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.3  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    26   4.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    26   5.6  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   5.6  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   9.9  
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.9  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 48/122 (39%), Positives = 69/122 (56%)
 Frame = +2

Query: 200 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 379
           GLFINN+ V S  G   K  +P+  ++I EV                  F+  +PWR   
Sbjct: 24  GLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFS 83

Query: 380 ASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 559
           +++RG  +++LAD IE++  YLAS+ETLDNGK    +  GD+ A+    RYY GWADK +
Sbjct: 84  SAQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLAR-GDVQAAADCFRYYGGWADKDY 142

Query: 560 GE 565
           G+
Sbjct: 143 GQ 144



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +1

Query: 619 GVCGXIIPWNFPILMAA 669
           GVCG IIPWNFP LM A
Sbjct: 162 GVCGQIIPWNFPFLMCA 178



 Score = 29.9 bits (64), Expect = 0.35
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 570 LPADGKYFAYTRHEPVGCVRSXNTMELPYI 659
           +  D K FAYTRHEP+G          P++
Sbjct: 146 IETDIKRFAYTRHEPIGVCGQIIPWNFPFL 175


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 87.0 bits (206), Expect = 2e-18
 Identities = 48/122 (39%), Positives = 72/122 (59%)
 Frame = +2

Query: 200 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMD 379
           GL+IN EW KS++  T++T +P+  +VIA+V                  FK    W+ + 
Sbjct: 22  GLYINGEWHKSAE--TWETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKT---WKKVP 76

Query: 380 ASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIH 559
            SE+G L+ KLA+L E+    LA++E +D+GKP   +  GD+  +I  LRY AGWADKI+
Sbjct: 77  GSEKGELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIY 136

Query: 560 GE 565
           G+
Sbjct: 137 GQ 138



 Score = 33.5 bits (73), Expect = 0.028
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 619 GVCGXIIPWNFPILMA 666
           GVCG I+PWN+P+ MA
Sbjct: 156 GVCGQIVPWNYPLNMA 171


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 36/120 (30%), Positives = 59/120 (49%)
 Frame = +2

Query: 206 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 385
           +I  +WV ++ GKTF  ENP   + +A V                  F     +R  D  
Sbjct: 27  YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFL---SYRNSDIK 83

Query: 386 ERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGE 565
           ER A++ +  DLI  +   LA++ TL+NGK   D+  G++  + K + ++AG A +I G+
Sbjct: 84  ERYAILRRWYDLIMENADDLATMMTLENGKALGDAK-GEVVYAAKFIDWFAGEALRISGD 142



 Score = 29.1 bits (62), Expect = 0.61
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 565 MSCPPTENTLLTLVMSQWGVCGXIIPWNFPILM 663
           MS  P +N ++T +    GV G I PWNFP  M
Sbjct: 145 MSSNP-QNRIIT-IKQPVGVVGIITPWNFPAAM 175


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 31/120 (25%), Positives = 57/120 (47%)
 Frame = +2

Query: 206 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTMDAS 385
           F+  +W+ S + KTF+ +NPA G++I +V                  FK    ++     
Sbjct: 21  FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFK---TYKNFTHV 77

Query: 386 ERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWADKIHGE 565
           +R  L+ + A+LI  ++  L  + TL+NGKP   +   ++      L++YA  A +  G+
Sbjct: 78  QRSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEM-EVTTCSGYLKWYAAEAVRTFGD 136



 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 580 TENTLLTLVMSQWGVCGXIIPWNFPILMAA 669
           ++N L++ +    GV   I PWNFP  M A
Sbjct: 144 SQNFLIS-IKQPVGVSALITPWNFPAAMIA 172


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
 Frame = +2

Query: 203 LFINNEWVKSSD--GKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFKLGSPWRTM 376
           LFI+ ++V   +   K     NPA  ++I    +                F+ G  W   
Sbjct: 23  LFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI-WAKW 81

Query: 377 DASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRYYAGWAD 550
              +RG ++ K+A ++   R  LA ++T++ GKP   + F D+ +      YYA  A+
Sbjct: 82  PGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALF-DIDSCADMFEYYAEVAE 138



 Score = 29.5 bits (63), Expect = 0.46
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 619 GVCGXIIPWNFPILMA 666
           GV G I PWNFP+ MA
Sbjct: 164 GVIGVITPWNFPLKMA 179


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +2

Query: 365 WRTMDASERGALINKLADLIERDRTYLASLETLDNGKPYKDSYFGDLYASIKNLRY 532
           W++   +ER   +  L + I R++   A +   D GK   D+ FG++  +++ + +
Sbjct: 41  WKSTSFAERRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGEILVTLEKINW 96


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 97   VAERLQIGSGAKSEFCNSCFSGTGSPNKT-GNFIHWSLHKQ*VGEV 231
            +A  +     +  + CN+   G    NK  GN IH+ L K   G+V
Sbjct: 1054 LAHEINAADSSSEQICNALRRGFLRLNKKLGNVIHYDLRKSSEGDV 1099


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 542 TRRSTVGFLLKHTDHRNTSP 483
           +RRST GFL KH+  ++ SP
Sbjct: 19  SRRSTKGFLQKHSSLKDGSP 38


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 15   IHLNKLVPVTVRDYFVCVLWNI*IY 89
            +H N  +P+   D FV +LW+  +Y
Sbjct: 969  LHSNITIPILQSDSFVGILWHTIVY 993


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -3

Query: 170 EPVPLKQLLQNSLFAPEPICRRSATFLIYLYVPKYTDKIISYSYRHKFV 24
           +P    + L+ ++ +   +C R AT  +Y Y P +    +S+SYR   +
Sbjct: 326 KPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSWA---LSWSYRKDLI 371


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 303 TKQMWTKL*RQLEMRSNLDHHGEQWTPPRGGPLST 407
           T  M TKL  Q +M+  +D H   WTP      ST
Sbjct: 24  TSAMDTKL--QTKMKEIIDQHTSTWTPVVSSVTST 56


>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 126

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 536 RSTVGFLLKHTDHRNTSPCMVCRCPAS 456
           R    F  K  ++ NT+  +VC CP S
Sbjct: 41  RKYENFFAKENENLNTAARLVCDCPIS 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,062
Number of Sequences: 5004
Number of extensions: 55619
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)