Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f10
         (204 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CPF4 Cluster: MRNA translation inhibitor SKI2 SFII he...    31   4.9  
UniRef50_Q3WHQ4 Cluster: ABC transporter, transmembrane region:A...    30   8.5  

>UniRef50_Q5CPF4 Cluster: MRNA translation inhibitor SKI2 SFII
           helicase, DEXDc+HELICc; n=2; Cryptosporidium|Rep: MRNA
           translation inhibitor SKI2 SFII helicase, DEXDc+HELICc -
           Cryptosporidium parvum Iowa II
          Length = 1439

 Score = 31.1 bits (67), Expect = 4.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 24  SDSRLEMVYTVNCDRVVITKDVERGSVWRGVVIAL 128
           +D  +E + TV  D V    D+ERG VW  V+I L
Sbjct: 239 NDPCIEQIQTVIFDEVHYINDLERGVVWEEVLILL 273


>UniRef50_Q3WHQ4 Cluster: ABC transporter, transmembrane region:ABC
           transporter; n=1; Frankia sp. EAN1pec|Rep: ABC
           transporter, transmembrane region:ABC transporter -
           Frankia sp. EAN1pec
          Length = 584

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +3

Query: 21  ISDSRLEMVYTVNCDRVVITKDVERGSVWRGVVIALIASL 140
           + +S + +V  +  DR ++T+D  +  +W GV++AL  +L
Sbjct: 68  VGESAVPVVMGLAIDRALVTRDAGQLVLWLGVLVALYVAL 107


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,662,929
Number of Sequences: 1657284
Number of extensions: 2470338
Number of successful extensions: 5806
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5795
length of database: 575,637,011
effective HSP length: 47
effective length of database: 497,744,663
effective search space used: 9954893260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)