Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f10
         (204 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    28   0.15 
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   0.79 
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   1.0  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    25   1.8  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    24   2.4  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    23   5.5  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    22   9.7  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 30  SRLEMVYTVNCDRVVITKDVERGSVW 107
           SR E+++ V   R   TKDVE+  +W
Sbjct: 451 SRFEILFPVKLQREDFTKDVEKSDLW 476


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 63  DRVVITKDVERGSVWRGVVIAL 128
           D V    D+ERG VW  V+I L
Sbjct: 393 DEVHYVNDLERGVVWEEVIIML 414


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 157 PCVKNPKLAMRAMTTPRHTLPRSTSLVITTRS 62
           P   + + A RAMT+PR  LPR  +    +RS
Sbjct: 504 PSTPSVRSASRAMTSPRTPLPRVKNTQNPSRS 535


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -2

Query: 188 GCGRQXGSLXAVREES*ACDEGYDHAAPYTATFNILGDHNPITINRVNHFET*I--RYQN 15
           G G+    +   R+      E     A Y + F +LGD   +T  RVN  E  I  R +N
Sbjct: 125 GLGKGGQQIQKARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIIIPRLEN 184

Query: 14  SXKH 3
           + K+
Sbjct: 185 TIKY 188


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 36  LEMVYTVNCDRVVITKDVERGSVWRGVVIALI 131
           +E V++++    V+T  VERG++ +G  I ++
Sbjct: 257 IEDVFSISGRGTVVTGRVERGTLKKGAEIEIV 288


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 63  DRVVITKDVERGSVWRGVVIAL 128
           D +   +D ERG VW   +I L
Sbjct: 311 DEIHYMRDKERGVVWEETIILL 332


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 63  DRVVITKDVERGSVWRGVVIALIASLGF 146
           D V   +D +RG VW   +I L  ++ F
Sbjct: 238 DEVHYMRDKDRGVVWEETLILLPDAIRF 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,829
Number of Sequences: 5004
Number of extensions: 9773
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)