Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f10
         (204 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934...    28   1.2  
11_06_0652 - 25906001-25906237,25906345-25906830                       27   1.6  
12_01_0109 + 853043-853426,853653-853787,853866-854138                 26   3.6  
03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953     26   3.6  
04_03_0232 - 13049649-13052807                                         26   4.8  
04_04_0497 + 25646005-25646142,25647320-25647395,25647506-256475...    25   6.4  
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    25   6.4  
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664...    25   8.4  

>02_05_0685 +
           30891289-30891810,30892740-30892915,30893379-30893492,
           30893846-30893954,30894038-30894124,30895137-30895736,
           30895823-30896101,30896808-30896897,30897151-30897507,
           30897924-30898160,30898733-30898953,30899856-30899955,
           30900042-30900188,30900287-30900385
          Length = 1045

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 24  SDSRLEMVYTVNCDRVVITKDVERGSVWRGVVI 122
           S+ RL  V  +  D V    D+ RG+VW   VI
Sbjct: 277 SEGRLFQVDVIVLDEVHYLSDISRGTVWEETVI 309


>11_06_0652 - 25906001-25906237,25906345-25906830
          Length = 240

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 83  GC*TWQCMARRGHSPHRKLRILHARXSNCXFDVHSPFG 196
           GC +W  M   G     K   ++AR SNC  D+ +  G
Sbjct: 83  GCLSWPLMLVTGDGLAAKFADVNARISNCLVDLQAANG 120


>12_01_0109 + 853043-853426,853653-853787,853866-854138
          Length = 263

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 119 DHAAPYTATFNILGDHNPITINRVNHFET*IRYQNS 12
           +H   Y  TF +  DH P  +     F+  I YQ S
Sbjct: 135 EHGDVYDLTFGLGADHPPTAVALRKEFQRIILYQQS 170


>03_06_0234 - 32535281-32535919,32536121-32536860,32536911-32536953
          Length = 473

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 200 VPRMGCGRQXGSLXAVREES*ACDE-GYDHAAP 105
           +P+ GCG     L  V E++ AC+E   D  AP
Sbjct: 27  IPKAGCGVDEFMLAEVNEKTGACEEKAGDDCAP 59


>04_03_0232 - 13049649-13052807
          Length = 1052

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 116 GHSPHRKLRILHARXSNCXFDVHSP 190
           GHS   +LR+LH   S C F   SP
Sbjct: 344 GHSNRSRLRVLH--LSQCTFSFSSP 366


>04_04_0497 +
           25646005-25646142,25647320-25647395,25647506-25647580,
           25647717-25647804,25647901-25648207
          Length = 227

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 137 ACDEGYDHAAPYTATFNILGDHNPITINRVNHFE 36
           +C+ G     PYTA  NIL  H     N   +++
Sbjct: 177 SCNSGDSRREPYTAAHNILLSHAAAVHNYKTNYQ 210


>02_01_0451 -
           3237849-3238061,3238142-3238268,3238418-3238656,
           3238937-3239151,3239569-3240031,3240562-3240715,
           3241724-3241833,3242540-3242797,3242843-3242854,
           3243492-3243545,3244202-3244312,3244390-3244545,
           3244798-3245201,3245405-3245501,3246041-3246050,
           3246097-3246164,3246652-3246762,3246874-3247074,
           3247384-3247485,3247980-3248087,3248209-3248411,
           3248563-3248680,3248774-3248854,3248958-3249500,
           3249602-3249730
          Length = 1428

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 63  DRVVITKDVERGSVWRGVVIAL 128
           D V    D ERG VW  V+I L
Sbjct: 499 DEVHYVNDAERGVVWEEVIIML 520


>09_06_0328 +
           22365308-22365415,22365743-22366018,22366166-22366417,
           22366542-22366939,22367028-22368021,22368199-22368409,
           22368515-22368749,22368874-22368996,22369190-22369310,
           22369416-22369625
          Length = 975

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 104 YTATFNILGDHNPITINRVNH 42
           ++ATF+ LG + P+ + + NH
Sbjct: 251 WSATFDFLGHNAPVVVVKFNH 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,074,416
Number of Sequences: 37544
Number of extensions: 70995
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)