Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f10
         (204 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical prote...    23   0.99 
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    22   3.0  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    21   5.3  

>AJ438610-6|CAD27478.1|  226|Anopheles gambiae hypothetical protein
           protein.
          Length = 226

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 105 WRGVVIALIASLGFFTHGXQTAXLTSTAHS 194
           WRG  + ++ S+GF  H  QT  L   A +
Sbjct: 72  WRGKRVLVLNSIGFVAH-LQTVRLQRPAEA 100


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 53  G*L*SGCDHQGC*TWQCMARRG 118
           G L SG DH  C   QC  R G
Sbjct: 600 GLLCSGPDHGRCVCGQCECREG 621


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 90  ERGSVWRGVVIALIASLGF 146
           + G VW   +  ++ SLGF
Sbjct: 582 QAGRVWNQTITEVLRSLGF 600


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,202
Number of Sequences: 2352
Number of extensions: 2864
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 45
effective length of database: 458,139
effective search space used: 10079058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)