Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f10
         (204 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    25   7.4  
U40801-6|AAO91729.1|  450|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U40801-5|AAO91727.1|  777|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U40801-4|AAO91728.1|  873|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AC006714-9|AAK29714.5|  430|Caenorhabditis elegans Patterned exp...    25   9.7  

>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical
           protein C14B4.2 protein.
          Length = 1776

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 78  TKDVERGSVWRGVVIALIASLGFFTHGXQTAXLTSTAHS 194
           T  VE+ S+W    + L      + HG QT   + T HS
Sbjct: 399 TATVEKDSIWSSTWVELETKQSVYFHG-QTKTRSMTLHS 436


>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical
           protein C14B4.2 protein.
          Length = 1776

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 78  TKDVERGSVWRGVVIALIASLGFFTHGXQTAXLTSTAHS 194
           T  VE+ S+W    + L      + HG QT   + T HS
Sbjct: 399 TATVEKDSIWSSTWVELETKQSVYFHG-QTKTRSMTLHS 436


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 118 TTPRHTLPRSTSLVITTRSQL 56
           TTPR T P +T+ + TTR+ L
Sbjct: 314 TTPRATTPLATTPLATTRAPL 334


>U40801-6|AAO91729.1|  450|Caenorhabditis elegans Hypothetical
           protein F28E10.1d protein.
          Length = 450

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 121 MTTPRHTLPRSTSLVITTRSQLTV*TISRRESDIKT 14
           +T+P   +P  T+L  TT   +    +SRR   + T
Sbjct: 48  LTSPEEEIPMDTNLTPTTEEVMEAVIVSRRIEGLMT 83


>U40801-5|AAO91727.1|  777|Caenorhabditis elegans Hypothetical
           protein F28E10.1b protein.
          Length = 777

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 121 MTTPRHTLPRSTSLVITTRSQLTV*TISRRESDIKT 14
           +T+P   +P  T+L  TT   +    +SRR   + T
Sbjct: 590 LTSPEEEIPMDTNLTPTTEEVMEAVIVSRRIEGLMT 625


>U40801-4|AAO91728.1|  873|Caenorhabditis elegans Hypothetical
           protein F28E10.1c protein.
          Length = 873

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 121 MTTPRHTLPRSTSLVITTRSQLTV*TISRRESDIKT 14
           +T+P   +P  T+L  TT   +    +SRR   + T
Sbjct: 686 LTSPEEEIPMDTNLTPTTEEVMEAVIVSRRIEGLMT 721


>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical
           protein F28E10.1a protein.
          Length = 1134

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 121 MTTPRHTLPRSTSLVITTRSQLTV*TISRRESDIKT 14
           +T+P   +P  T+L  TT   +    +SRR   + T
Sbjct: 732 LTSPEEEIPMDTNLTPTTEEVMEAVIVSRRIEGLMT 767


>AC006714-9|AAK29714.5|  430|Caenorhabditis elegans Patterned
           expression site protein 4 protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 115 TPRHTLPRSTSLVITTR 65
           +PR T P +TSLV+T R
Sbjct: 59  SPRETSPSTTSLVLTIR 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,200,221
Number of Sequences: 27780
Number of extensions: 57864
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)