Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f10
         (204 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    25   0.068
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    25   0.068
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   3.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   3.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   5.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    19   7.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    19   7.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   7.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    19   7.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   7.8  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 0.068
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 15  VLISDSRLEMVYTVNCDRVVITKDVERGSVW 107
           +L+SDS +E    +  D  V+ + VE+  +W
Sbjct: 169 LLVSDSDVESYKQIKSDLDVLRQSVEKSELW 199


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 25.4 bits (53), Expect = 0.068
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 15  VLISDSRLEMVYTVNCDRVVITKDVERGSVW 107
           +L+SDS +E    +  D  V+ + VE+  +W
Sbjct: 137 LLVSDSDVESYKQIKSDLDVLRQSVEKSELW 167


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 119  DHAAPYTATFNILGDHNPITINRVNHFET 33
            D   PY ATF++LG    +  ++   F+T
Sbjct: 1720 DEICPY-ATFHLLGFREEMDPSKAMQFQT 1747


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
          isoform B protein.
          Length = 931

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 71 NPITINRVNH 42
          +P+T+NR+ H
Sbjct: 12 SPLTLNRITH 21


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
          isoform A protein.
          Length = 969

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 71 NPITINRVNH 42
          +P+T+NR+ H
Sbjct: 50 SPLTLNRITH 59


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 74  HNPITINR 51
           H P+T+NR
Sbjct: 258 HQPVTVNR 265


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 102 VWRGVVIALIASLGF 146
           +W G++  +I  LGF
Sbjct: 50  MWHGILGFVIGMLGF 64


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 102 VWRGVVIALIASLGF 146
           +W G++  +I  LGF
Sbjct: 16  MWHGILGFVIGMLGF 30


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 128 EGYDHAAP 105
           EGY HA P
Sbjct: 448 EGYPHAVP 455


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 128 EGYDHAAP 105
           EGY HA P
Sbjct: 363 EGYPHAVP 370


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 128 EGYDHAAP 105
           EGY HA P
Sbjct: 682 EGYPHAVP 689


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,878
Number of Sequences: 438
Number of extensions: 662
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)