Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f07
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    25   7.9  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   7.9  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   7.9  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   7.9  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 316  IDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTVG 441
            +D   Q+  +  + ++ + I    DL P     HNV+++T+G
Sbjct: 1460 VDPSAQLLVFVGRWSHQKGIDLIADLAPKLLTEHNVQLITIG 1501


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 323 SSISLRPVVSMSQPIREYFPGGRPTGFSASAGGTSVFASISLPFTFTSVT 174
           +S S+ P  + + P+    P   PT  S     T+   S S+P+T T VT
Sbjct: 395 TSTSIPPTGNSTTPVTPTVP---PTSSSTPLTTTNCTTSTSVPYTSTPVT 441


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 373 YIGNKSVSEYTLLFGISHLL 314
           Y G K  S YT+LFG+S  L
Sbjct: 420 YYGLKEQSFYTVLFGVSRTL 439


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 402 SRVKVTIRHNILGISLFRSIRCYLAYLIY*SPSCC 298
           ++ K T+  NI+  +LFR+    L  L+    +CC
Sbjct: 784 TKAKSTVNANIVAGTLFRNYTTILGLLLRLRQACC 818


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = +3

Query: 81  IRRASYRSTRLIFCLPTSVHQRVC----KLGINGH---GD*SESE 194
           +  AS RS+ L+FC+      +VC    KLGI+     G+ ++SE
Sbjct: 259 LEHASNRSSTLVFCINVEHSLKVCNAFRKLGIDARALFGETNDSE 303


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 575  SWYIRMTLPSPFSFSNQSRKSVKADISDFVLRIL*ETI 462
            S+YI+  L   + FS Q  +   A+  DFV +I  ET+
Sbjct: 926  SFYIQFPLLELYKFSCQQLQDYIAEGKDFVTKIEEETL 963


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,338
Number of Sequences: 5004
Number of extensions: 48149
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)