Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f05
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049...    30   0.94 
05_01_0278 + 2156126-2156128,2157677-2158069                           29   2.9  
09_04_0697 + 19566182-19566851,19567565-19567598,19567677-195677...    27   6.6  
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377...    27   8.8  
01_06_0518 + 29988613-29989193,29989596-29989622,29989759-299898...    27   8.8  

>03_04_0020 -
           16504322-16504654,16504758-16504785,16504937-16504989,
           16505377-16505463,16505636-16505704,16506071-16506145,
           16507040-16507210,16507693-16507793,16508062-16508139,
           16508492-16508648,16508737-16509006,16509369-16509485,
           16510250-16510339,16510417-16510629,16510742-16510891,
           16511929-16512342
          Length = 801

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 146 VKNPWLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEGSRE 325
           VKN   T +  L  GD   II  ND   + +S +E V +    +     N++ I EG  +
Sbjct: 352 VKNAMYTTLSELVQGDYFNIITFNDELHSFSSCLEQVNEKTIENAREWVNTNFIAEGGTD 411


>05_01_0278 + 2156126-2156128,2157677-2158069
          Length = 131

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 267 FKVILWFWKTPT*SLKVPVSIHHLM 341
           FK  LWFW TP    K P S H +M
Sbjct: 34  FKTALWFWMTPRPPSK-PYSCHDVM 57


>09_04_0697 +
           19566182-19566851,19567565-19567598,19567677-19567725,
           19567891-19567949,19568063-19568079,19568178-19568329,
           19568459-19568548,19568793-19568886,19568976-19569127,
           19569630-19569727,19570049-19570184,19570695-19570793,
           19570898-19571029
          Length = 593

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 53  NLPIACYLF-QGNKLTAL*FRYLLFKK-YCKIIVKNPWLTNMDNLKNGDNVLI 205
           +L IA Y F +G+ LT +   + +    Y  ++  NP +TN D +  GD VL+
Sbjct: 31  SLAIAAYYFSEGSNLTFIATIFAIGGGGYQALLPYNPAITNPDYVVTGDRVLV 83


>03_05_1019 +
           29736644-29736709,29737156-29737515,29737595-29737735,
           29737912-29738044,29738344-29738457,29738553-29738701,
           29740815-29740907,29741019-29741079,29741180-29741512,
           29742149-29742224,29742322-29742421,29743300-29743369,
           29743987-29744082,29744355-29744402,29744427-29744658,
           29745186-29745246,29745265-29745375
          Length = 747

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 399 ANSLSECETLWGGNQFERTTSNDECSREPSVIMSEFSRTT 280
           AN + ECE+ W G        +++CS    V  ++++  T
Sbjct: 580 ANGICECESGWTGIDCSTAVCDEQCSLHGGVCDNDYAGYT 619


>01_06_0518 +
           29988613-29989193,29989596-29989622,29989759-29989891,
           29990006-29990240,29990524-29990566,29990672-29990952,
           29991293-29991423,29991812-29991946
          Length = 521

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 163 YKHGQLEKRRQCSYYLEERQSRKHYEPNRRR 255
           Y HG LE+    SYY ++R+  K Y P   R
Sbjct: 266 YDHGYLERTLSQSYYHDDREEYK-YVPKEPR 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,121,225
Number of Sequences: 37544
Number of extensions: 215084
Number of successful extensions: 491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)