Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f05
(511 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY094947-1|AAM11300.1| 233|Drosophila melanogaster RH63449p pro... 32 0.39
AE014134-1611|AAF52752.1| 233|Drosophila melanogaster CG13108-P... 32 0.39
AY060402-1|AAL25441.1| 248|Drosophila melanogaster LD32407p pro... 31 0.69
AE014134-2554|AAF53433.1| 248|Drosophila melanogaster CG4180-PA... 31 0.69
AY075582-1|AAL68387.1| 841|Drosophila melanogaster SD08161p pro... 29 2.8
AJ312282-1|CAC41644.1| 841|Drosophila melanogaster nuclear RNA ... 29 2.8
AE014296-2758|AAF49447.3| 841|Drosophila melanogaster CG4118-PB... 29 2.8
AE014296-2757|AAF49448.3| 841|Drosophila melanogaster CG4118-PA... 29 2.8
>AY094947-1|AAM11300.1| 233|Drosophila melanogaster RH63449p
protein.
Length = 233
Score = 32.3 bits (70), Expect = 0.39
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 140 IIVKNPWLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITE-G 316
++VK L D LKN N L +W+ D Q N+ VK + + ++ +S + +
Sbjct: 115 LLVKKSDLMENDWLKN--NRLCLWRKDEQTNLLQKYLRVKSAAEEEELLFTSSSVYSSWD 172
Query: 317 SREHSSFDVVLSNWLPPHS 373
++ S F V N L P++
Sbjct: 173 DQQTSDFIEVKVNCLDPNN 191
>AE014134-1611|AAF52752.1| 233|Drosophila melanogaster CG13108-PA
protein.
Length = 233
Score = 32.3 bits (70), Expect = 0.39
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 140 IIVKNPWLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITE-G 316
++VK L D LKN N L +W+ D Q N+ VK + + ++ +S + +
Sbjct: 115 LLVKKSDLMENDWLKN--NRLCLWRKDEQTNLLQKYLRVKSAAEEEELLFTSSSVYSSWD 172
Query: 317 SREHSSFDVVLSNWLPPHS 373
++ S F V N L P++
Sbjct: 173 DQQTSDFIEVKVNCLDPNN 191
>AY060402-1|AAL25441.1| 248|Drosophila melanogaster LD32407p
protein.
Length = 248
Score = 31.5 bits (68), Expect = 0.69
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Frame = +2
Query: 170 MDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEGSREHSSFDVVL 349
M+N K L IW + + ++ +E +K D V LEN ++ S +SSFD+++
Sbjct: 1 MENFKGLQKSLYIWTDSA--DLDKRVEQLKAATGGD-VALENVHRLSFSSYANSSFDLIV 57
Query: 350 SNWLPPHSVSHSDXXXXXXXXXXXPNGKLILKD----LNKLTSTLKLNGFVNVXE 502
+ P+GKL L L +KL+GF+N E
Sbjct: 58 I------ECAQLTDSYVKLLHMLKPSGKLHLVSYIGPAASLLQEIKLSGFINCRE 106
>AE014134-2554|AAF53433.1| 248|Drosophila melanogaster CG4180-PA
protein.
Length = 248
Score = 31.5 bits (68), Expect = 0.69
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Frame = +2
Query: 170 MDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEGSREHSSFDVVL 349
M+N K L IW + + ++ +E +K D V LEN ++ S +SSFD+++
Sbjct: 1 MENFKGLQKSLYIWTDSA--DLDKRVEQLKAATGGD-VALENVHRLSFSSYANSSFDLIV 57
Query: 350 SNWLPPHSVSHSDXXXXXXXXXXXPNGKLILKD----LNKLTSTLKLNGFVNVXE 502
+ P+GKL L L +KL+GF+N E
Sbjct: 58 I------ECAQLTDSYVKLLHMLKPSGKLHLVSYIGPAASLLQEIKLSGFINCRE 106
>AY075582-1|AAL68387.1| 841|Drosophila melanogaster SD08161p
protein.
Length = 841
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 32 ASSHWLGNLPIACYLFQGNKLTAL*FRYLLFKKYCKIIVK-NPWLTNMDNL 181
+S H LGNLP+ + GNKL Y L +Y + + + P LT +D +
Sbjct: 515 SSIHSLGNLPLKSLVLHGNKLCR---NYRLPSEYVRAVKEVFPQLTTLDGV 562
>AJ312282-1|CAC41644.1| 841|Drosophila melanogaster nuclear RNA
export factor 2 (NXF2) protein.
Length = 841
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 32 ASSHWLGNLPIACYLFQGNKLTAL*FRYLLFKKYCKIIVK-NPWLTNMDNL 181
+S H LGNLP+ + GNKL Y L +Y + + + P LT +D +
Sbjct: 515 SSIHSLGNLPLKSLVLHGNKLCR---NYRLPSEYVRAVKEVFPQLTTLDGV 562
>AE014296-2758|AAF49447.3| 841|Drosophila melanogaster CG4118-PB,
isoform B protein.
Length = 841
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 32 ASSHWLGNLPIACYLFQGNKLTAL*FRYLLFKKYCKIIVK-NPWLTNMDNL 181
+S H LGNLP+ + GNKL Y L +Y + + + P LT +D +
Sbjct: 515 SSIHSLGNLPLKSLVLHGNKLCR---NYRLPSEYVRAVKEVFPQLTTLDGV 562
>AE014296-2757|AAF49448.3| 841|Drosophila melanogaster CG4118-PA,
isoform A protein.
Length = 841
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 32 ASSHWLGNLPIACYLFQGNKLTAL*FRYLLFKKYCKIIVK-NPWLTNMDNL 181
+S H LGNLP+ + GNKL Y L +Y + + + P LT +D +
Sbjct: 515 SSIHSLGNLPLKSLVLHGNKLCR---NYRLPSEYVRAVKEVFPQLTTLDGV 562
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,362,421
Number of Sequences: 53049
Number of extensions: 401613
Number of successful extensions: 1111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1846255872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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