Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f05
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003385-5|AAB54245.1| 494|Caenorhabditis elegans Hypothetical ... 29 2.0
U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical p... 28 3.4
AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-relat... 28 3.4
U40947-1|AAC48068.1| 610|Caenorhabditis elegans Hypothetical pr... 28 4.5
L13200-8|AAA28188.2| 324|Caenorhabditis elegans Hypothetical pr... 28 4.5
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 27 7.9
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 27 7.9
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 27 7.9
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 27 7.9
>AF003385-5|AAB54245.1| 494|Caenorhabditis elegans Hypothetical
protein R08F11.3 protein.
Length = 494
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 113 YLLFKKYCKIIVKNPWLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDT 280
+ K Y +I V PW+ + K+ D+VL WK+ S S IE+ + I DT
Sbjct: 209 FATLKIYVEIFV--PWIGKLLPGKSLDDVLNYWKDTSYEFFNSQIENHRLKIDFDT 262
>U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical
protein F55F8.3 protein.
Length = 910
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +2
Query: 134 CKIIVKNPWLTNMDNLKNGDNVLIIWKNDSQG-NITSLIEDVKKVIQSDTVVLENSDMIT 310
CK + N W N L+ G+ V IWK D +G + ++ED ++ ++ ++
Sbjct: 209 CKRGLANVWTCN---LRPGELVEGIWKKDEEGSDDIEMLEDGEQKVEKIFFEKTKKYWLS 265
Query: 311 EGSREHSSFDVVLSNW 358
E S S DV + +
Sbjct: 266 ESSGSGKSVDVTAARF 281
>Z93393-11|CAB07698.2| 536|Caenorhabditis elegans Hypothetical
protein Y48E1B.13a protein.
Length = 536
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 181 EKRRQCSYYLEERQSRKHYEPNRRRKKSNSK-*YC 282
E R CSY LEE S+ P KKSN K YC
Sbjct: 251 ETRHDCSYSLEEYDSQSRM-PRTDAKKSNHKHKYC 284
>AF088285-1|AAC98292.1| 536|Caenorhabditis elegans caspase-related
protein 1A protein.
Length = 536
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 181 EKRRQCSYYLEERQSRKHYEPNRRRKKSNSK-*YC 282
E R CSY LEE S+ P KKSN K YC
Sbjct: 251 ETRHDCSYSLEEYDSQSRM-PRTDAKKSNHKHKYC 284
>U40947-1|AAC48068.1| 610|Caenorhabditis elegans Hypothetical
protein R03E9.2 protein.
Length = 610
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 360 YLPTVSHILINYWQ*SLNYSNQMVNLYSK 446
Y+P VS I++N W ++N M N +S+
Sbjct: 315 YIPNVSTIILNSWMSTINELGYMGNRFSE 343
>L13200-8|AAA28188.2| 324|Caenorhabditis elegans Hypothetical
protein ZK1236.7 protein.
Length = 324
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 181 EKRRQCSYYLEERQSRKHYEPNRRRKKSNSK 273
EKR+ Y + ER+ RK E R +K+ +
Sbjct: 144 EKRQMREYEVREREERKRREEEREKKRDEER 174
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 137 KIIVKNPWLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEG 316
+++ N WL D N N ++W GNIT + K+ + D ++ + D +
Sbjct: 67 QVVYVNAWL---DYTWNDYN--LVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDTNFDS 121
Query: 317 SREHSS--FDVVLSNWLPP 367
+ + + + L +W+PP
Sbjct: 122 TYQTNMIVYSTGLVHWVPP 140
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 137 KIIVKNPWLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEG 316
+++ N WL D N N ++W GNIT + K+ + D ++ + D +
Sbjct: 67 QVVYVNAWL---DYTWNDYN--LVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDTNFDS 121
Query: 317 SREHSS--FDVVLSNWLPP 367
+ + + + L +W+PP
Sbjct: 122 TYQTNMIVYSTGLVHWVPP 140
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 137 KIIVKNPWLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEG 316
+++ N WL D N N ++W GNIT + K+ + D ++ + D +
Sbjct: 67 QVVYVNAWL---DYTWNDYN--LVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDTNFDS 121
Query: 317 SREHSS--FDVVLSNWLPP 367
+ + + + L +W+PP
Sbjct: 122 TYQTNMIVYSTGLVHWVPP 140
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 137 KIIVKNPWLTNMDNLKNGDNVLIIWKNDSQGNITSLIEDVKKVIQSDTVVLENSDMITEG 316
+++ N WL D N N ++W GNIT + K+ + D ++ + D +
Sbjct: 67 QVVYVNAWL---DYTWNDYN--LVWDKAEYGNITDVRFPAGKIWKPDVLLYNSVDTNFDS 121
Query: 317 SREHSS--FDVVLSNWLPP 367
+ + + + L +W+PP
Sbjct: 122 TYQTNMIVYSTGLVHWVPP 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,289,280
Number of Sequences: 27780
Number of extensions: 220128
Number of successful extensions: 647
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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