Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f04
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   100   1e-22
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   1.3  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   3.0  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            25   5.2  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   5.2  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   6.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.9  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    25   6.9  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   9.1  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  100 bits (240), Expect = 1e-22
 Identities = 50/102 (49%), Positives = 62/102 (60%)
 Frame = +2

Query: 221 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 400
           EV I SAVRTPM                   +  A+ER  I   ++ EV++GNV SANLG
Sbjct: 5   EVYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLG 64

Query: 401 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAPGLQT 526
           Q PARQ  + AGLP+S +CTTVNKVCASGMK+ +L A  + T
Sbjct: 65  QNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMT 106


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 246 LTADAITTSLRETLVENAAIAVNIGFILMLIILFPFKKIMIYSLQIYFEYSRT 88
           +T+D +  +LRETLV N A +  +   L   +     +I I +L IY E  +T
Sbjct: 229 ITSDDLKIALRETLVANDAFSKLLLPALFERLKASTVRIKIDALNIYIEACKT 281


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 421 CNICRFAKKYHMYNCKQSMC 480
           CN+C +  KY   NC  S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 158 NIKMKPIFTAMAAFSTKVSLNEVVIASAV 244
           N K    F   +AFST +SLN+ ++ S +
Sbjct: 256 NFKCLDAFDLRSAFSTYLSLNQPMVVSVI 284


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +1

Query: 373 WQCLFCKFGPSTCKTSCNICRFAKKYHM 456
           W C  C F     +TSC  C F    H+
Sbjct: 347 WNCPMCGFSNFQRRTSCFRCSFPGPTHV 374


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 496 RFHARGTYFVYSCTYGTF 443
           RF  R  Y +YSC YG+F
Sbjct: 467 RFLRRLLYHLYSCQYGSF 484


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 330 SIAALTATAPNSDADKLDKLPRKEPI 253
           S+ A+  T+P  + +K DK+PR + +
Sbjct: 167 SLNAMEQTSPKEEDEKSDKVPRVDKV 192


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 327 IAALTATAPNSDADKLDKL 271
           +AA+ ATAP  ++DKLD L
Sbjct: 354 LAAIHATAPAYESDKLDYL 372


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 216 RETLVENAAIAVNIGFILMLIILFPFK 136
           RE    +AAI VN G +   + L PFK
Sbjct: 209 REPYKNSAAINVNTGTVTHFVALAPFK 235


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 357 ISSLGIPALSIAALTATAPNSDADKLDKLPRK 262
           +S+LG  +L   + T T  N+D+DK    P K
Sbjct: 410 VSTLGNVSLKTPSDTFTLTNTDSDKKTSKPEK 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,562
Number of Sequences: 5004
Number of extensions: 36608
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)