Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f04
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 95 2e-20
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 93 9e-20
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 42 2e-04
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 40 0.001
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 30 1.3
12_02_0279 - 16704284-16704925 28 4.0
07_03_1285 + 25477542-25477625,25477776-25477832,25477973-254780... 28 5.3
07_01_0218 - 1623373-1625418 28 5.3
06_01_0855 + 6493239-6494420 28 5.3
12_01_0155 + 1182404-1182461,1182557-1182747 27 9.2
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 95.5 bits (227), Expect = 2e-20
Identities = 47/101 (46%), Positives = 62/101 (61%)
Frame = +2
Query: 221 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 400
+V I RTP+ + AA+ RA + ++EV++GNV SANLG
Sbjct: 16 DVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMGNVLSANLG 75
Query: 401 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAPGLQ 523
QAPARQA + AGLP + CTTVNKVC+SGMK++MLAA +Q
Sbjct: 76 QAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQ 116
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 93.5 bits (222), Expect = 9e-20
Identities = 44/107 (41%), Positives = 61/107 (57%)
Frame = +2
Query: 200 STKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGN 379
S + +V + RTPM + AA++RA + ++EV+ GN
Sbjct: 3 SDNIGSRDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFGN 62
Query: 380 VCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAPGL 520
V SANLGQAPARQA + AG+P + +C+ VNKVCASGMK+ M AA +
Sbjct: 63 VLSANLGQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSI 109
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = +2
Query: 218 NEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXV-NAAIERAGIPKEEIKEVYIGNVCSAN 394
++VV+ +A RTP+ V A ++ I EI ++ +G V
Sbjct: 47 DDVVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTVLGPG 106
Query: 395 LGQA-PARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAPGLQ 523
+A R A +AG+P++ TVN+ C+SG++++ A ++
Sbjct: 107 SQRAIECRAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIK 150
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +2
Query: 218 NEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXV-NAAIERAGIPKEEIKEVYIGNVCSAN 394
++VVI +A RT + V A I++ + E+ ++ +G V +
Sbjct: 49 DDVVIVAAYRTAICKSKRGGFKDTPAEDLLVPVFKALIDKTKLNPSEVGDIVVGTVLAPG 108
Query: 395 LGQA-PARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAPGLQ 523
+A R A +AG P + TVN+ C+SG++++ A ++
Sbjct: 109 SQRAIECRMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIK 152
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 373 WQCLFCKFGPSTCKTSCNICRFAKKYHMY 459
WQC C+ G K SC C + + +Y
Sbjct: 43 WQCTICEHGNDAKKKSCEQCGVLRYFSLY 71
>12_02_0279 - 16704284-16704925
Length = 213
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 448 YHMYNCKQSMCLWH 489
YH Y CK MCLWH
Sbjct: 201 YHKY-CKSRMCLWH 213
>07_03_1285 +
25477542-25477625,25477776-25477832,25477973-25478040,
25478187-25478391,25478429-25478586,25478865-25478940,
25479065-25479124,25479186-25479236,25479663-25479741,
25480183-25480271
Length = 308
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Frame = +1
Query: 421 CNICR-----FAKKYHMYNCKQSMCLWHEIYNV 504
C++CR F +++H NC +++C H Y++
Sbjct: 15 CDVCRCTFTTFRRRHHCRNCGRTLCHEHSSYHM 47
>07_01_0218 - 1623373-1625418
Length = 681
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 318 LTATAPNSDADKLDKLPRKEP 256
+ AP D DKL KLPR EP
Sbjct: 274 INGPAPAIDIDKLPKLPRAEP 294
>06_01_0855 + 6493239-6494420
Length = 393
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Frame = -2
Query: 363 SFISSLGIPALSIAALTATAPN-SDADKLDKLPRK-EPIGVL----TADAITTSLRETLV 202
+F+S LG+P IAA+ P AD L R+ + +G L + A L T
Sbjct: 87 AFLSDLGLPPRKIAAVATADPRFLCADVESNLARRVDELGGLGLSRSQIARLVPLALTCF 146
Query: 201 ENAAIAVNIGFILMLI 154
++++ N+GF L ++
Sbjct: 147 RSSSVGTNLGFWLQIV 162
>12_01_0155 + 1182404-1182461,1182557-1182747
Length = 82
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 210 TLVENAAIAVNIGFILMLIILFPFKKIMIYSLQIYF 103
T + IA NIGF+L I L ++ +YSL F
Sbjct: 47 TFMSMHGIAFNIGFLLKWISLESLSQLNVYSLSYPF 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,485
Number of Sequences: 37544
Number of extensions: 209801
Number of successful extensions: 552
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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