Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f04
(526 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 91 3e-19
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 77 6e-15
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 70 9e-13
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 40 0.001
AF000261-10|AAB52930.1| 639|Caenorhabditis elegans Hypothetical... 29 2.0
Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 27 8.2
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 27 8.2
U41104-2|AAK18974.3| 304|Caenorhabditis elegans Nuclear hormone... 27 8.2
U41104-1|AAR30202.1| 318|Caenorhabditis elegans Nuclear hormone... 27 8.2
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 27 8.2
AY204195-1|AAO39198.1| 364|Caenorhabditis elegans nuclear recep... 27 8.2
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 91.5 bits (217), Expect = 3e-19
Identities = 47/109 (43%), Positives = 61/109 (55%)
Frame = +2
Query: 200 STKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGN 379
S +S I A RTP+ + AA+ER + I+EV++G
Sbjct: 16 SAALSNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQ 75
Query: 380 VCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAPGLQT 526
VC AN GQAPARQA + AGL S TTVNKVC+SG+K+I+LAA +QT
Sbjct: 76 VCQANAGQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAIILAAQQIQT 124
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 77.4 bits (182), Expect = 6e-15
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Frame = +2
Query: 200 STKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKE--VYI 373
S +S + I A RTP+ + AA+ER + I+E V++
Sbjct: 94 SAALSNKDAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFL 153
Query: 374 GNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAPGLQT 526
G VC AN GQA ARQA + AGL S TTVNK +SGMK+I+LAA +QT
Sbjct: 154 GQVCHANAGQASARQAALGAGLDLSVAVTTVNKGWSSGMKAIILAAQQIQT 204
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 70.1 bits (164), Expect = 9e-13
Identities = 41/101 (40%), Positives = 54/101 (53%)
Frame = +2
Query: 209 VSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCS 388
+S +V I S RTP+ AAIER+G+ E+I+EV G V
Sbjct: 1 MSDKKVFILSGARTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEVIGGCVLP 60
Query: 389 ANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAA 511
A LGQ RQ + AGLP +T TVNKVC+S MK+++ AA
Sbjct: 61 AGLGQNVTRQISLSAGLPVTTQAVTVNKVCSSSMKALVTAA 101
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Frame = +2
Query: 182 TAMAAFST-KVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEI 358
TA AA + K ++ +V+ AVRTP + A +E+ +P E++
Sbjct: 11 TARAASAVAKKNMPNIVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQL 70
Query: 359 KEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCAS 484
+ G V AR+A + AG+P TV C S
Sbjct: 71 DHIICGTVIQECKTSNIAREAALLAGVPDKIPAHTVTLACIS 112
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 320 AAIERAGIPKEEIKEVYIGNV-CSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKS 496
AA++ A + + + V GNV S+ G +R + +G+P++ TVN++C SG ++
Sbjct: 38 AALKHANVGADAVDHVIFGNVVASSRDGIYLSRHIGLKSGVPQNVGALTVNRLCGSGFQA 97
Query: 497 IMLAAPGLQ 523
++ AA ++
Sbjct: 98 VVNAAQAIK 106
>AF000261-10|AAB52930.1| 639|Caenorhabditis elegans Hypothetical
protein F19B10.10 protein.
Length = 639
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 418 SCNICRFAKKYHMYNCKQSMCLWHEI 495
+C++ R A KY+ Y +QS LW I
Sbjct: 15 ACSLRRMANKYYPYTMRQSFPLWTSI 40
>Z99102-1|CAB11776.1| 523|Caenorhabditis elegans Hypothetical
protein B0331.2 protein.
Length = 523
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 501 IIDFMPEAHTLFTVVHMVLFGKPANITACLAGA 403
I F E T FTV+ V FG P + T C GA
Sbjct: 443 ISGFCIEVGTAFTVLICVKFGIPISSTHCTVGA 475
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 403 STCKTSCNICRFAKKYHMYNCKQSMCL 483
S C SC+ C ++ Y C S CL
Sbjct: 242 SVCPKSCSQCFYSNSTSSYECCDSACL 268
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 403 STCKTSCNICRFAKKYHMYNCKQSMCL 483
S C SC+ C ++ Y C S CL
Sbjct: 242 SVCPKSCSQCFYSNSTSSYECCDSACL 268
>U41104-2|AAK18974.3| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 109, isoform a protein.
Length = 304
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 112 NLF*VFTDNGKRSY*LKMICYRFEIK*ILKLFIHVHY 2
NLF F DN KRS L M+ + +I L LF +H+
Sbjct: 181 NLFKPFYDNYKRSLLLPMMNLQVDIYEFLTLFTLLHW 217
>U41104-1|AAR30202.1| 318|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 109, isoform b protein.
Length = 318
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 112 NLF*VFTDNGKRSY*LKMICYRFEIK*ILKLFIHVHY 2
NLF F DN KRS L M+ + +I L LF +H+
Sbjct: 195 NLFKPFYDNYKRSLLLPMMNLQVDIYEFLTLFTLLHW 231
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 403 STCKTSCNICRFAKKYHMYNCKQSMCL 483
S C SC+ C ++ Y C S CL
Sbjct: 293 SVCPKSCSQCFYSNSTSSYECCDSACL 319
>AY204195-1|AAO39198.1| 364|Caenorhabditis elegans nuclear receptor
NHR-109 protein.
Length = 364
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -1
Query: 112 NLF*VFTDNGKRSY*LKMICYRFEIK*ILKLFIHVHY 2
NLF F DN KRS L M+ + +I L LF +H+
Sbjct: 241 NLFKPFYDNYKRSLLLPMMNLQVDIYEFLTLFTLLHW 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,845,177
Number of Sequences: 27780
Number of extensions: 211791
Number of successful extensions: 701
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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