Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8f03
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   2.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.0  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   2.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   2.0  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   3.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.9  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 310 TAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNVQMHGSYNMDTLH 456
           T A    T+R + +  TLA+   N + G   + T      G +  ++LH
Sbjct: 4   TGADRLMTQRCKEKLNTLAISVMNQWPGVRLLVTEGWDEEGYHTPESLH 52


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 92  SPSNSTTTSRSVSPGPRVLDAPRKPLTST 178
           S SN+T +S   SP       P KP TST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATST 161


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 92  SPSNSTTTSRSVSPGPRVLDAPRKPLTST 178
           S SN+T +S   SP       P KP TST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATST 161


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 92  SPSNSTTTSRSVSPGPRVLDAPRKPLTST 178
           S SN+T +S   SP       P KP TST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATST 161


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 92  SPSNSTTTSRSVSPGPRVLDAPRKPLTST 178
           S SN+T +S   SP       P KP TST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATST 161


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 92  SPSNSTTTSRSVSPGPRVLDAPRKPLTST 178
           S SN+T +S   SP       P KP TST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATST 161


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 92  SPSNSTTTSRSVSPGPRVLDAPRKPLTST 178
           S SN+T +S   SP       P KP TST
Sbjct: 89  SNSNATKSSGLTSPLSVSTSPPGKPATST 117


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 92  SPSNSTTTSRSVSPGPRVLDAPRKPLTST 178
           S SN+T +S   SP       P KP TST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATST 161


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 92  SPSNSTTTSRSVSPGPRVLDAPRKPLTST 178
           S SN+T +S   SP       P KP TST
Sbjct: 133 SNSNATKSSGLTSPLSVSTSPPGKPATST 161


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 353 SSPSLLAQLTSSPEAP--GSPPPMSR 424
           SSP L  +++ SP  P   SPPP  R
Sbjct: 83  SSPILAEKVSVSPTTPPTPSPPPEER 108


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 244 SQVQQDGGEHQRLRQNHPQSWYRRSQRL 161
           S V  D G   + +  H   W+RR  RL
Sbjct: 2   SGVVGDAGRASKGQDKHMVHWFRRGLRL 29


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 353  SSPSLLAQLTSSPEAPGSPPPMSR 424
            S PS    + ++ E PG PP   R
Sbjct: 980  SEPSETVTIITAEEVPGGPPTSIR 1003


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 492 LHQQHPAHQPSQWKQQLCWYLG 557
           + +QHP H     +QQ   Y G
Sbjct: 171 MQEQHPQHHQPHHQQQHMMYGG 192



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 492 LHQQHPAHQPSQWKQQ 539
           +HQQ P HQ    +QQ
Sbjct: 198 MHQQGPPHQQPPIQQQ 213


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 492 LHQQHPAHQPSQWKQQLCWYLG 557
           + +QHP H     +QQ   Y G
Sbjct: 173 MQEQHPQHHQPHHQQQHMMYGG 194



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 492 LHQQHPAHQPSQWKQQ 539
           +HQQ P HQ    +QQ
Sbjct: 200 MHQQGPPHQQPPIQQQ 215


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.130    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,030
Number of Sequences: 336
Number of extensions: 2361
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)