Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8f02
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 186 2e-48
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 85 9e-18
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 84 2e-17
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 82 5e-17
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 33 0.028
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 31 0.087
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 31 0.15
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 29 0.61
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 29 0.61
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 27 1.4
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces... 27 1.4
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 27 1.9
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 27 2.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.3
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 3.3
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 4.3
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ... 25 5.7
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 25 7.5
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 10.0
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 10.0
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 25 10.0
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 186 bits (453), Expect = 2e-48
Identities = 88/125 (70%), Positives = 100/125 (80%)
Frame = +3
Query: 183 MFILDWFTGVLGFLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELS 362
MFI++WF L LGL K K+LFLGLDNAGKTTLLHMLK+DRLA PTLHPTSEEL+
Sbjct: 1 MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELA 60
Query: 363 IGSMRFTTFDLGGHXQARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLS 542
IG++RFTTFDLGGH QARR+WRDYFP V+ IV+LVD CD RL ESKAELD+LL E L+
Sbjct: 61 IGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELA 120
Query: 543 NCPVL 557
P L
Sbjct: 121 RVPFL 125
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 84.6 bits (200), Expect = 9e-18
Identities = 37/107 (34%), Positives = 67/107 (62%)
Frame = +3
Query: 237 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHXQAR 416
K ++L LGLD AGKTT+L+ LK ++ +PT+ E ++ +++F +D+GG + R
Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIR 79
Query: 417 RVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVL 557
+WR YF ++F+VD+ D R+ E++ EL +++D + +C +L
Sbjct: 80 PLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLL 126
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 83.8 bits (198), Expect = 2e-17
Identities = 39/108 (36%), Positives = 65/108 (60%)
Frame = +3
Query: 234 KKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHXQA 413
K+ ++L +GLD AGKTT+L+ LK + +PT+ E + ++ FT +D+GG +
Sbjct: 15 KREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKI 74
Query: 414 RRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVL 557
R +WR YF I+F+VD+ DR R+ E+ EL +L ++ L + +L
Sbjct: 75 RPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLL 122
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 82.2 bits (194), Expect = 5e-17
Identities = 40/104 (38%), Positives = 63/104 (60%)
Frame = +3
Query: 228 LWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHX 407
L ++ ++L LGLDNAGKTT+L L ++ + + PT L + +RFT +D+GG
Sbjct: 12 LKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQK 71
Query: 408 QARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETL 539
R W++YF + +AI+++VD+ D RL E + L LL +E L
Sbjct: 72 TLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKL 115
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 33.1 bits (72), Expect = 0.028
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 306 DDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHXQARRVWRDYFPAVDAIVFLVDACD 479
DD L TL + ++ ++ FD+GG RR W F V++I+F V D
Sbjct: 170 DDILRSRNSTLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLND 227
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 31.5 bits (68), Expect = 0.087
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 309 DRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHXQARRVWRDYFPAVDAIVFLV 467
D L + T + E + + FD+GG RR W F V A++FLV
Sbjct: 213 DILHCRIKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLV 265
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 30.7 bits (66), Expect = 0.15
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Frame = +3
Query: 246 KLLFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSE----ELSIGSMRFTTFDLGGHXQ 410
KLL +G GK+ LL DD + ++ T+ + EL +++ +D G +
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 411 ARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSL 521
R + Y+ I+ + D D+ K L +
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEI 106
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 28.7 bits (61), Expect = 0.61
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 234 KKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHXQA 413
KK + +G ++GKT+L L VP++ P G+ DL GH +A
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKYGAW---LVDLPGHPRA 91
Query: 414 RRVWRDYFPA---VDAIVFLVDA 473
+R F V A+VF++++
Sbjct: 92 KRWITTKFSGNYNVKAVVFVLNS 114
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.61
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 399 GHXQARRVWRDYFPAVDAIVFLVDACDRPRLPESKAEL 512
G ++RRVW+++ A+DA + + ++ ++ E + EL
Sbjct: 306 GEYESRRVWKNFAVALDAGDYAAASQEKSKIEEGQREL 343
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 166 TFQIQKCLSSTGSLECWDFLVYGKSRASSCFW 261
+ I++ L + GSL D L+ G S A FW
Sbjct: 655 SIDIKRVLENVGSLNHEDILLIGSSNAKYSFW 686
>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 243 GKLLFL-GLDNAGKTTLLHMLKDDRLAQH 326
G+L+ + GLD +GK+T +L D ++QH
Sbjct: 7 GRLIVIEGLDRSGKSTQCQLLVDKLISQH 35
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 237 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 323
K + L +G + AGK+TLL +L LA+
Sbjct: 29 KGSRTLLVGANGAGKSTLLKLLSGKSLAK 57
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 2.5
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -2
Query: 367 PIDSSSDVGCKVGTC*ASLSSFNICKSVVFPALSSPRNKSLPDFFHRPRNP 215
P SD G T +SLS+FN C S+ F + +S S H PRNP
Sbjct: 436 PSTPLSDNGPTYSTPHSSLSNFNTCDSLSFSSNNSLYGYS--TLLH-PRNP 483
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 283 VFPALSSPRNKSLPDFFHRPRNPNTPVNQSRINIFESGT*RNN 155
+F SS R S F+H P+N +N S + F G NN
Sbjct: 510 IFEIESSLRLSSNKVFYHNPKNKKWLINTSDLITFSLGYICNN 552
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 292 KSVVFPALSSPRNKSLPDFFHRPRNPNTPVN 200
+S +PAL++P S+ D + P P +P+N
Sbjct: 256 QSTYWPALAAPVYPSMKDVPNNPFTPFSPIN 286
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 274 ALSSPRNKSLPDFFHRPRNPNTPVNQS 194
A S N LP F P + ++PVNQS
Sbjct: 73 AEESDPNLKLPSFLAPPNDKDSPVNQS 99
>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 129 LQRLRHNGNDLQIFFSFNCVTASRARIN 46
LQ H+ N Q SFNC+T S +N
Sbjct: 270 LQHGSHSFNGKQFETSFNCLTPSENTVN 297
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = +3
Query: 303 KDDRLAQHVPTLH----PTSEELSIGSMRFTTF 389
KD +A+HV LH +SE L+IG + F F
Sbjct: 520 KDRNIARHVINLHTNLQESSETLAIGEIPFDKF 552
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 313 LSSFNICKSVVFPALSSPRNKSLPDFFH 230
LS F C++++F L+S P FFH
Sbjct: 121 LSLFAFCRTILFSLLTSFLLVPPPQFFH 148
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 372 YCLLTVPRM*DVK*VHVEQVYHLSTYVRVLSSLHCQVPETRACPTF 235
YC L ++ D+ H +V+ + + S++H Q T+A F
Sbjct: 145 YCYLIASKIDDLLDSHPNEVFKETLICVIQSAVHSQASSTKAQTQF 190
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 237 KSGKLLFLGLDNAGKTTLLHMLKDDRL--AQHVPTLHP 344
++GK+ +GL N T L +LK ++ A H LHP
Sbjct: 157 ETGKVRHIGLSNFNDTNLERILKVAKVKPAVHQMELHP 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,357
Number of Sequences: 5004
Number of extensions: 46454
Number of successful extensions: 163
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -