Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8e24
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    33   0.022
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    26   3.3  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   7.6  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   7.6  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.6  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   7.6  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.6  

>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 33.5 bits (73), Expect = 0.022
 Identities = 26/101 (25%), Positives = 48/101 (47%)
 Frame = +3

Query: 150 KPIDAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIK 329
           K +  F +YSV+D D  +ER R+    +   + V+   + R++W +F   K+ ++    +
Sbjct: 217 KMVANFEEYSVEDVDKRRERNRK----LSEPLLVNGRYRVRDRWAQFR--KSEIEKP-YR 269

Query: 330 LNELVDESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTG 452
                DE      LP+ +H+ +  E + +    ED FH  G
Sbjct: 270 FTFFTDE------LPSTIHSHEMWELVHDGQSFEDLFHSGG 304


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
            polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 186  DTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLK 287
            D D +   +R  + L+HSN  ++ +KQ+ E+  K
Sbjct: 1035 DVDQMNSLLREAFVLLHSNNIMERLKQEFEERYK 1068


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 66   KMAAEVEKKPVSMIDPSQLLRPEPTFNDKPIDAFRDYSVDDTD 194
            + AA   K P+  +DPS     EP+  D       D  VDD D
Sbjct: 1441 RRAAATVKTPI-YVDPSFDSMDEPSMQDDSFIVDNDEDVDDYD 1482


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 204 ERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNELVDESDPDTDLPNI 380
           ER  R Y L   N+  D   + R+     N +KA VK   +   ++ +E + D D+P I
Sbjct: 431 ERQERDYELFLQNLEED--PELRQG---VNLYKAPVKAIAVADTDMDEEDEVDEDIPQI 484


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 54  LTNNKMAAEVEKKPVSMIDPSQLLRPEPTFNDKP 155
           + N  + AE+E K +  ID  +L RP+    +KP
Sbjct: 488 IENVPIIAEIENKSIDSIDTRKLNRPQ-DIEEKP 520


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 405 RIRED-HPDEDWFHLTGLIHDLGKVMAFYDEPQWCVVGDTFPVGCK 539
           R+ +D   D D F    L   +GK +++Y     C+V   FP+G K
Sbjct: 514 RLPDDMQQDLDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNK 559


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 375 NIVHAFQTAERIREDHPDEDWFHLTG 452
           NI+ + +TAE IR   PD+  FH+ G
Sbjct: 179 NILRSDKTAEEIRSVPPDQ-LFHIAG 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,147
Number of Sequences: 5004
Number of extensions: 42812
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)