Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8e24
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323... 137 6e-33
04_01_0063 - 630345-633743 32 0.36
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549... 30 1.5
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629... 29 2.5
11_06_0437 - 23533218-23536382 28 4.4
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042... 28 5.9
12_01_0988 - 10039187-10039243,10039356-10039649,10039838-100402... 27 7.7
01_05_0106 + 18160018-18160243,18160423-18160470,18160816-181609... 27 7.7
>06_03_0471 +
21130839-21130869,21131013-21131127,21132228-21132309,
21132444-21132648,21133237-21133296,21133420-21133472,
21133589-21133711,21133844-21133913,21134012-21134090,
21134172-21134253,21134272-21134310
Length = 312
Score = 137 bits (331), Expect = 6e-33
Identities = 66/137 (48%), Positives = 90/137 (65%), Gaps = 3/137 (2%)
Frame = +3
Query: 159 DAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDALIKLNE 338
+AFR+Y + KE V Y + H N T D V++ RE++ + + + + + + LNE
Sbjct: 46 NAFRNYEAESER--KETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLNE 103
Query: 339 LVDESDPDTDLPNIVHAFQTAERIREDHPDEDWFHLTGLIHDLGKVM---AFYDEPQWCV 509
+D+SDPD D+P I H QTAE IR+D PDEDW HLTGLIHDLGKV+ +F + PQW V
Sbjct: 104 FIDDSDPDLDMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSV 163
Query: 510 VGDTFPVGCKWADSIVY 560
VGDTFPVGC + + V+
Sbjct: 164 VGDTFPVGCAFDECNVH 180
>04_01_0063 - 630345-633743
Length = 1132
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 63 NKMAAEVEKKPVSMIDPSQLLRPEPTFNDKP-IDAFRDYSVDDTDPIKERVRRTYY 227
+K+ K V+M SQ + P P FN++ + F Y++DD + + R T+Y
Sbjct: 279 SKVLVTTRFKDVAMSLSSQRIIPVPNFNEEDFFNLFMHYALDDAVSLDGQERETFY 334
>11_04_0430 +
17653553-17654285,17654305-17654627,17654795-17654921,
17655123-17655338,17655463-17655494
Length = 476
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +2
Query: 254 FGQTKTREMAKVQPLQGHSEGCSHQAQ*AGGRVRPRHGPTKHRARF 391
FGQ R + +PL GH H+ + AGGR R R G T R+
Sbjct: 43 FGQ---RNRGRFRPLFGHKPPFGHKLREAGGRAR-RDGLTSRTGRY 84
>09_04_0518 -
18261420-18261953,18262054-18262626,18262736-18262948,
18263379-18263510,18263591-18263731,18263899-18264120
Length = 604
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 240 NVTVDLVKQKREKWLKFNH-FKATVKDALIKLNELVDES 353
NV LV REK +++H FKA +ALI+++ L+ +S
Sbjct: 137 NVLPTLVYMAREKSPQYHHNFKAGALNALIRVSALISDS 175
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 423 PDEDWF-HLTGLIHDLGKVMAFYDEPQWCVVGD 518
PD F H+ IHDL + +AF+ Q C VGD
Sbjct: 505 PDGSHFDHIRCKIHDLLRQLAFHLSRQECFVGD 537
>12_02_0828 -
23502276-23503472,23503568-23504002,23504097-23504213,
23505330-23505396,23505685-23505725,23506161-23506237,
23506699-23506945
Length = 726
Score = 27.9 bits (59), Expect = 5.9
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +3
Query: 177 SVDDTDPIKERVRRTYYLMHSNVTVDLVKQKREKWLKFNHFKATVKDAL--IKLNELVDE 350
S ++ RVR +++ + LV ++ KF ++ AL I NEL D
Sbjct: 118 SFEERPQTLHRVRVINGMLYECYDIILVLERDSVMKKFQGVILQLEQALCDIPYNEL-DI 176
Query: 351 SDPDTDLPNIVHAFQTAERIREDHPDEDWFH 443
SD + +VHA + R D PD+++++
Sbjct: 177 SDEVREQVELVHAQLKRAKERIDMPDDEFYN 207
>12_01_0988 -
10039187-10039243,10039356-10039649,10039838-10040202,
10042916-10042931
Length = 243
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +3
Query: 264 QKREKWLKFNHFKAT-VKDALIK--LNELVDESDPDTDLPNIVHAFQTAERIREDHPDED 434
+K W K N VKDA+ + ++D +D T L NI +F+ A + E+
Sbjct: 71 KKLANWEKSNRMCLIYVKDAISPEVIGGIIDSNDIKTYLANIEESFEFAPEAHANTLKEE 130
Query: 435 WFHLTGLIHDL 467
W ++H +
Sbjct: 131 WTIQELILHSV 141
>01_05_0106 +
18160018-18160243,18160423-18160470,18160816-18160974,
18162056-18162219,18162778-18162885,18163695-18163865,
18163945-18164478,18164574-18164648,18164724-18164852,
18164975-18165049,18165129-18165338,18165529-18165681,
18165763-18165986,18166305-18166422,18166518-18166656,
18166745-18166946,18166981-18167149,18167190-18167267,
18167268-18167408,18167717-18167819,18169024-18169324,
18169450-18169518,18169602-18169626,18170946-18170975
Length = 1216
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +3
Query: 138 TFNDKPIDAFRDYSVDDTDPIKERVRRTYYLMHSNVTVDL-----VKQKREKWLKFNHFK 302
TF ++ D D ++ + + + +RR YY S+ T + ++ E LK N
Sbjct: 195 TFIEEVPDQDLDVWINSSACVPDALRRYYYQYLSSTTEAAEEKISILRENETLLKDNESL 254
Query: 303 ATVKDALIKLNELVD 347
KDALIK E+ +
Sbjct: 255 GAEKDALIKSREVAN 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,619,666
Number of Sequences: 37544
Number of extensions: 315767
Number of successful extensions: 875
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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