Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8e22
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 61 8e-11
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni... 27 1.3
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 1.3
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 26 3.8
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 5.1
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 5.1
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 25 6.7
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 6.7
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 8.9
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 25 8.9
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 25 8.9
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 8.9
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 25 8.9
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 61.3 bits (142), Expect = 8e-11
Identities = 27/116 (23%), Positives = 64/116 (55%)
Frame = +3
Query: 72 LDEIVSSEDLQKFERVFHEQLHQGNVSHKAQFEYAWCLVRSKYPTDIRKGILLLKELFNS 251
+D I+S ++ + + + + Q ++ + +F AW LVRS +++G+ L ++
Sbjct: 15 IDSIISVDEFLQIKEQYDAE--QPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKD 72
Query: 252 HPEGKRDYLFYLAIGNARIKEYNKALHYVKSFLEIEPANQQVLALERQINKRMEKE 419
PE + + L+Y+A+ + ++K+Y ++ Y+ L +P + + L L+ ++ + KE
Sbjct: 73 SPERRLECLYYIALSHYKLKQYEESRRYLNMLLSKDPNSPEALKLKNRLYDAVTKE 128
>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 246 NSHPEGKRDYLF--YLAIGNARIKEYNKALHYVKSFLEIEPANQ 371
NS+P ++ F Y+ + R +EYNKA+ + +L + P NQ
Sbjct: 113 NSYPNRNAEHFFPAYIMLLIQR-QEYNKAMKLLDEYLLLPPYNQ 155
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 103 KNSRGSFMNNCIKGTFPTKPSLNTHGV*CAASIQR-IYERESYFLKNCSTLILKAN 267
K R +++NN + KP LN++G IQ I E LKN + AN
Sbjct: 516 KGGRENYLNNRVSSYRLVKPILNSYGNHVLNRIQHDILENHFCCLKNVKDFVCGAN 571
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 87 SSEDLQKFERVFHEQLHQGNVSHKAQFE 170
+ +++ E++ HEQL++ N K +FE
Sbjct: 162 NQREVESLEQLVHEQLNKLNTESKMEFE 189
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 22 YLIKVIIYSNRLQWKTY*TRLFHRKICKNSRGSFMNNCIKGTFPTKPSL 168
YL K I + +R+ T + HR I RGSF N F T P L
Sbjct: 2 YLTKQIPHYSRIHTTQLLTVVNHRTIPFKIRGSFSNCRRYSNFATVPLL 50
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 63 EDVLDEIVSSEDLQKFERVFHEQLHQGNV 149
E++ D +VS E+L+K RVF + +GNV
Sbjct: 217 EEIRDLLVS-EELRKPARVFEDTSRRGNV 244
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 126 EQLHQGNVSHKAQFEYAWCLVRSKYPTDI 212
+ H G ++ K Q E+AW +V Y + +
Sbjct: 144 QAFHDGIINQK-QLEFAWSIVNDSYASSL 171
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 221 SLSYIRWILAAH*TPCVFKLGFVGNVPLMQLFMKDPLEFLQ 99
SL + R +L+A VF FV + + L ++DP+ FLQ
Sbjct: 587 SLPWGRTLLSAALWITVFIAKFVESYYFLTLSVRDPIRFLQ 627
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 312 EYNKALHYVKSFLEIEPANQQVLALERQ 395
++NK + K E+EP Q+VL E+Q
Sbjct: 636 DFNKVEKFGKEIEELEPVVQKVLDEEKQ 663
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/61 (27%), Positives = 20/61 (32%)
Frame = +3
Query: 75 DEIVSSEDLQKFERVFHEQLHQGNVSHKAQFEYAWCLVRSKYPTDIRKGILLLKELFNSH 254
DE + L K +R E L QG K C + LKE FN
Sbjct: 228 DESQDKDKLTKLDRAKLEWLIQGLNCEKGSIGNLLCFAVEHVNNHVEITDAFLKEFFNDQ 287
Query: 255 P 257
P
Sbjct: 288 P 288
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 123 HEQLHQGNVSHKAQFEYAWCLVRSKY 200
H H +++K F YAW L S Y
Sbjct: 164 HPAFHFLPMNNKESFHYAWSLFTSTY 189
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 8.9
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 168 EYAWCLVR--SKYPTDIRKGILLLKE--LFNSHPEGKRDYLFY-LAIGNARIKEYNKALH 332
+YAW ++ +K DI + L L+ L +H + L+Y + + +KEY A
Sbjct: 428 DYAWGMLYDIAKAYMDIERLDLALEYFVLICNHEPAQNIGLWYNMGVCYLELKEYEHAQQ 487
Query: 333 YVKSFLEIEPANQQVLALERQINK 404
+++ L ++ +N L +IN+
Sbjct: 488 CMEAILIVDNSNTNALIKLAEINE 511
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 228 LLKELFNSHPEGKRDYLFY-LAIGNARIKEYNKALHYVKSFLEIEPANQQV 377
LLK + S + K + ++ LAI K+YN +L ++ L I P N+ +
Sbjct: 62 LLKCGYASSIDPKSQFCWHALAIVYRETKDYNNSLKCYQNALAISPNNESL 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,590
Number of Sequences: 5004
Number of extensions: 43023
Number of successful extensions: 111
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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