Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8e22
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0194 - 41896831-41896895,41897377-41897440,41898074-418981... 48 6e-06
05_04_0140 - 18358997-18359082,18359255-18359318,18359469-183595... 36 0.026
09_02_0417 - 8915604-8916779,8916863-8917270 31 0.42
01_01_0915 - 7215863-7216063,7216743-7216802,7220032-7220091,722... 31 0.42
06_03_1429 + 30100834-30102261 29 2.9
06_03_1420 - 30053713-30055140 29 2.9
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 29 2.9
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377... 29 2.9
09_01_0116 - 1797740-1797788,1798087-1798166,1798245-1798424,179... 28 3.9
05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722... 28 5.1
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 27 8.9
>01_07_0194 -
41896831-41896895,41897377-41897440,41898074-41898195,
41898304-41898433,41899659-41899751
Length = 157
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +3
Query: 174 AWCLVRSKYPTDIRKGILLLKELF--NSHPEGKRDYLFYLAIGNARIKEYNKALHYVKSF 347
+W LV S+ D+ +GI +L+ + P R+ L+ LA+G+ R +Y ++ ++
Sbjct: 54 SWALVHSRNTDDVNRGIAMLQASLGGSKSPLEAREKLYLLAVGHYRNGDYPRSRQLLEHC 113
Query: 348 LEIEPANQQVLALERQINKRMEK 416
LEI+P Q L+L++ + ++ K
Sbjct: 114 LEIQPGWGQALSLKKTVEDKIAK 136
>05_04_0140 -
18358997-18359082,18359255-18359318,18359469-18359583,
18360101-18360216,18360420-18360541,18360628-18360757,
18361328-18361420
Length = 241
Score = 35.5 bits (78), Expect = 0.026
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 174 AWCLVRSKYPTDIRKGILLLKELF--NSHPEGKRDYLFYLAIGNARIKEYNKALHYVKSF 347
+W LV SK D+ +GI +L+ ++ P R+ L+ LA+G+ R +Y ++ V
Sbjct: 54 SWALVHSKNQEDVNRGIGMLEASLGQSNSPLQTREKLYLLAVGHYRNGDYPRSRQLVDRC 113
Query: 348 LE 353
LE
Sbjct: 114 LE 115
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 63 EDVLDEIVSSEDLQKFERVFHEQLHQGNVSHK-AQFEYAWCLVRSKYPTDIRKGILLLKE 239
E V+ E S+ + + H + H + K A F WC V++KYP+ +G+ L+ +
Sbjct: 151 EKVVAEYNSTIPATRRRELQHVKGHWHKIFRKVAHFHDCWCRVKAKYPSGHSEGMQLMDK 210
Query: 240 LFNSHPEGKR 269
+ + E R
Sbjct: 211 TWLMYNEEAR 220
>01_01_0915 -
7215863-7216063,7216743-7216802,7220032-7220091,
7221138-7221203,7221927-7221992,7222334-7222411,
7222940-7223297,7224548-7224606
Length = 315
Score = 31.5 bits (68), Expect = 0.42
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -1
Query: 210 YP-LDTCCALNTMRIQTG-LCGKRSLDAIVHERPS 112
YP L CC+ N M+ QTG + G+RS D + E P+
Sbjct: 213 YPYLGQCCSANPMQQQTGIMAGERSTDGLFPEFPA 247
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 446 RSCPCPWRARGTWNRTCFKEIAF 514
R P PW A+G W R ++++F
Sbjct: 241 RDMPLPWPAKGNWRRYLNEDVSF 263
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 446 RSCPCPWRARGTWNRTCFKEIAF 514
R P PW A+G W R ++++F
Sbjct: 241 RDMPLPWPAKGNWRRYLNEDVSF 263
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +3
Query: 306 IKEYNKALHYVKSFLEIEPANQQVLALERQINKRMEK 416
+KEY+KAL ++ L+ +P NQ++L R+ +R+ K
Sbjct: 644 MKEYDKALETYQAGLKHDPNNQELLDGVRRCVQRINK 680
>04_03_0306 +
14136338-14136686,14137408-14137442,14137701-14137778,
14138046-14138124,14138731-14138823,14139472-14139556,
14140270-14140345,14140669-14140794,14141039-14141137,
14141238-14141339,14141561-14141671,14141809-14141904,
14142488-14142539,14142624-14142735,14142879-14142943,
14144124-14144521,14145236-14145330,14145989-14146015,
14146081-14146156,14146368-14146421,14146741-14146863,
14146955-14147023
Length = 799
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 297 NARIKEYNKALHYVKSFLEIEPANQQVLALERQINKRM 410
N+ +KE N H + L++E + Q LA+ER NK +
Sbjct: 678 NSSLKESNIFSHSLLRLLKVEESLSQELAIERDKNKSL 715
>09_01_0116 -
1797740-1797788,1798087-1798166,1798245-1798424,
1799223-1799324,1801026-1801178,1801804-1801932,
1802791-1802930,1803941-1804066,1805792-1805963
Length = 376
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 306 IKEYNKALHYVKSFLEIEPANQQVLALERQINKRMEKE 419
IK+Y KA L+++PAN+ + R + M+K+
Sbjct: 333 IKDYGKACEAFADGLKLDPANEDIKKALRDAEEAMKKD 370
>05_03_0678 -
16871481-16871620,16871836-16871881,16872170-16872243,
16872495-16872552,16872640-16872702,16872891-16873012,
16873132-16873247,16873367-16873428,16873497-16873589,
16874061-16874138,16874248-16874423,16874500-16874550,
16874964-16875078
Length = 397
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = -3
Query: 250 ELNNSLRSKIPFRISVGYLLR---TKHHAYS 167
E+ NS++ K PF+I +G + K HAY+
Sbjct: 92 EMENSIKEKCPFKIDIGPVYSVDPAKRHAYA 122
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 117 VFHEQLHQGNVSHKAQFEYAWCLVRSKYPTDIRKGILLLKELFNSHPEGKRDY--LFYLA 290
+F ++ H N S K Q+E KYP + G LK++ NS D+ + L
Sbjct: 186 LFEKRPHDMNYSAKHQYEKETSSTFRKYPAGL--GNTSLKDIRNSSRGKLEDFNSIVVLE 243
Query: 291 IGNARIKEYNKA 326
G +++E KA
Sbjct: 244 PGLGKVQESGKA 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,707,127
Number of Sequences: 37544
Number of extensions: 256352
Number of successful extensions: 602
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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