Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8e22
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   5.7  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   10.0 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   10.0 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   10.0 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   10.0 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   10.0 

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 211 ISVGYLLRTKHHAYSNWALWETFP 140
           +++G+L   KH+     ALW   P
Sbjct: 82  LNLGFLAWAKHNPRGKDALWSLVP 105


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 270 DYLFYLAIGNARIKEYNKALHYVKSFLEIE 359
           +Y  Y    N     YNK L+Y    + IE
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYIINIE 355


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 214 ERESYFLKNCSTLILKANVTT 276
           ERE   L NC T I KA+  T
Sbjct: 153 EREFTGLGNCLTKIFKADGIT 173


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 214 ERESYFLKNCSTLILKANVTT 276
           ERE   L NC T I KA+  T
Sbjct: 153 EREFTGLGNCLTKIFKADGIT 173


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 106 NSRGSFMNNCIKGTFPTKPS 165
           NS GSF   C      T PS
Sbjct: 69  NSPGSFTAGCHSNLLSTSPS 88


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 106 NSRGSFMNNCIKGTFPTKPS 165
           NS GSF   C      T PS
Sbjct: 69  NSPGSFTAGCHSNLLSTSPS 88


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +3

Query: 60  MEDVLDEIVSSEDLQKFERV 119
           +ED +  ++SSE+L+ F+++
Sbjct: 64  VEDFVRLLMSSEELRLFDKI 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,156
Number of Sequences: 438
Number of extensions: 2816
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)