Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8e13
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 104 7e-23
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 95 5e-20
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 91 7e-19
09_02_0115 + 4413714-4414475 32 0.48
04_03_0839 + 20220909-20222471 29 2.5
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 3.3
12_02_0312 + 17395716-17398112 29 4.4
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 5.9
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 28 7.7
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 104 bits (249), Expect = 7e-23
Identities = 70/209 (33%), Positives = 107/209 (51%), Gaps = 11/209 (5%)
Frame = +1
Query: 76 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 255
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 256 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 435
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 436 ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIK-KDVVLKVDTENFLSPDT---- 600
L +L EP V +R R+ D VES+L A+ +Y +K + + VD + +L P
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPPSPSSHD 180
Query: 601 -----C-GGIELVAARGRIKISNTLESRL 669
C GG+ L + G+I NTL++RL
Sbjct: 181 SHERFCSGGVVLASRDGKIVCENTLDARL 209
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 95.1 bits (226), Expect = 5e-20
Identities = 69/220 (31%), Positives = 111/220 (50%), Gaps = 22/220 (10%)
Frame = +1
Query: 76 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 255
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 256 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 432
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 433 ----------QALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNKIKKDV-VLKVDTE 579
Q+L +L EP+V +R R+ D+ VES+L A+++Y K K ++ + +D +
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGK 180
Query: 580 NFLSPDT---------C-GGIELVAARGRIKISNTLESRL 669
+L P C GG+ + + G+I NTL++R+
Sbjct: 181 VYLPPPKTARDAHGPFCSGGVVIASQDGKIVCDNTLDARV 220
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 91.1 bits (216), Expect = 7e-19
Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 21/219 (9%)
Frame = +1
Query: 76 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 255
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 256 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 435
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 436 ----------ALFQLMEPTVTIRVRQTDKALVESLLGKAQQDYKNK---------IKKDV 558
+L +L EP V +R R+ D+ LVES+L A+ +Y +K + ++V
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNV 181
Query: 559 VLKVDTENFLS--PDTCGGIELVAARGRIKISNTLESRL 669
L ++ + P GG+ L + G+I NTL++RL
Sbjct: 182 YLPPAPSHYEAHGPSCSGGVVLASRDGKIVCENTLDARL 220
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 405 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 503
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>04_03_0839 + 20220909-20222471
Length = 520
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = -1
Query: 637 YVPWLQPARYHHRCRATKSSQCRLSTQRPS*SYSCSLVELFRAGTPPEP 491
Y+P+L+P + +A + ++ T P + ++V RAG+PP+P
Sbjct: 231 YLPFLRPFLWRQHRQAVALRREQIDTVLPLINRRRAIVRGMRAGSPPDP 279
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 304 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 438
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 277 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 420
++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 423 TYCAGSLPAHGTHCHHPRPSNRQGSGG 503
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 533 TRIRSRRTLC*KSTLRTFCRPTPVVVSSWLQPGDVSRSATLWSLAW 670
T S +T C S +R F T +SW P D+ R A + +W
Sbjct: 330 TYATSLKTSCGPSDIRRFAETT---AASWPMPSDIRRFAETTAASW 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,029,746
Number of Sequences: 37544
Number of extensions: 345048
Number of successful extensions: 1054
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -