Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d24
         (608 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0FDQ8 Cluster: Putative uncharacterized protein; n=1; ...   196   3e-49
UniRef50_Q5MGF8 Cluster: Putative uncharacterized protein; n=1; ...    49   8e-05
UniRef50_UPI0000E4906C Cluster: PREDICTED: similar to mirror-ima...    38   0.19 
UniRef50_A4CI94 Cluster: Type I restriction-modification system,...    32   9.3  
UniRef50_Q9FYQ8 Cluster: Endosomal protein-like; n=30; Eukaryota...    32   9.3  

>UniRef50_A0FDQ8 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 272

 Score =  196 bits (479), Expect = 3e-49
 Identities = 106/142 (74%), Positives = 106/142 (74%)
 Frame = +3

Query: 111 MKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSXXXXXXXXXXXXXXXXXXX 290
           MKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDS                   
Sbjct: 1   MKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKAEPAP 60

Query: 291 XSNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVE 470
            SNDEVPAIPEAKKDDIAPEDSDIA                AKSSEIPDAEAKSADIKVE
Sbjct: 61  VSNDEVPAIPEAKKDDIAPEDSDIAKPETVPEVKTEEKVPEAKSSEIPDAEAKSADIKVE 120

Query: 471 EPAAQPEDSKTEVQATVAEISK 536
           EPAAQPEDSKTEVQATVAEISK
Sbjct: 121 EPAAQPEDSKTEVQATVAEISK 142



 Score = 51.6 bits (118), Expect = 1e-05
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +1

Query: 526 KFQKEEKPSATDAEGSADSAAIIPNMV 606
           +  KEEKPSATDAEGSADSAAIIPNMV
Sbjct: 139 EISKEEKPSATDAEGSADSAAIIPNMV 165


>UniRef50_Q5MGF8 Cluster: Putative uncharacterized protein; n=1;
           Lonomia obliqua|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 206

 Score = 49.2 bits (112), Expect = 8e-05
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +3

Query: 108 KMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPI 203
           +MKVLLLC+AFAAVS+AMPVAEEK  V   P+
Sbjct: 18  RMKVLLLCMAFAAVSMAMPVAEEKPEVAEVPV 49


>UniRef50_UPI0000E4906C Cluster: PREDICTED: similar to mirror-image
           polydactyly protein; n=2; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to mirror-image
           polydactyly protein - Strongylocentrotus purpuratus
          Length = 1002

 Score = 37.9 bits (84), Expect = 0.19
 Identities = 22/54 (40%), Positives = 32/54 (59%)
 Frame = +1

Query: 433 PMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKEEKPSATDAEGSADSAAII 594
           PML   L   K KNQ+LS K  + K ++ SLK Q   K + ++AE +A  A++I
Sbjct: 512 PMLLDELGATKDKNQVLSEKCSEAKLEIESLKMQLGVKDAMSEAEIAAKGASLI 565


>UniRef50_A4CI94 Cluster: Type I restriction-modification system, M
           subunit; n=1; Robiginitalea biformata HTCC2501|Rep: Type
           I restriction-modification system, M subunit -
           Robiginitalea biformata HTCC2501
          Length = 894

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 418 NHPRFPMLKQNLLILKWKNQLLSLKIQ---KLKYKLPSLKFQKEEKPSATDAEGSADS 582
           NH     +K+ L +LK  + +  L+ Q    LK+ LPSLK QK E   AT      DS
Sbjct: 574 NHLHSDSIKRQLALLKKGSGISYLRRQDLLSLKFALPSLKEQKSEMVQATKLYRQIDS 631


>UniRef50_Q9FYQ8 Cluster: Endosomal protein-like; n=30;
           Eukaryota|Rep: Endosomal protein-like - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 658

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +1

Query: 418 NHPRFPMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKF-----QKEEKPSATDAEGSADS 582
           N P     K++  +L+W    + +K+Q + Y    LKF     + EE  +     G+ D+
Sbjct: 134 NLPAIRYTKRDGYVLRWTGYPVGIKVQDVYYVFNHLKFKVLVHKYEEAANVARVMGTGDA 193

Query: 583 AAIIPNM 603
           A +IP +
Sbjct: 194 AEVIPTI 200


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 447,971,027
Number of Sequences: 1657284
Number of extensions: 6663356
Number of successful extensions: 19007
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18953
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)