Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8d23
(557 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q7PVQ9 Cluster: DNA-directed RNA polymerase II subunit ... 215 6e-55
UniRef50_Q59FR2 Cluster: MGC13098 protein variant; n=8; Deuteros... 172 4e-42
UniRef50_Q38859 Cluster: DNA-directed RNA polymerase II subunit ... 125 8e-28
UniRef50_Q54ZA7 Cluster: RNA polymerase II core subunit; n=2; Di... 121 1e-26
UniRef50_P38902 Cluster: DNA-directed RNA polymerase II subunit ... 116 4e-25
UniRef50_A4S056 Cluster: Predicted protein; n=2; Ostreococcus|Re... 113 3e-24
UniRef50_Q4PC39 Cluster: Putative uncharacterized protein; n=1; ... 111 8e-24
UniRef50_Q5KMB4 Cluster: DNA-directed RNA polymerase ii 13.3 kDa... 106 4e-22
UniRef50_P87123 Cluster: DNA-directed RNA polymerase II subunit ... 104 1e-21
UniRef50_Q9C256 Cluster: Related to DNA-directed RNA polymerase ... 97 2e-19
UniRef50_A4R2Q3 Cluster: Putative uncharacterized protein; n=2; ... 95 1e-18
UniRef50_UPI00004997FF Cluster: RNA polymerases II subunit; n=1;... 87 2e-16
UniRef50_A3FPR0 Cluster: RNA polymerase II, putative; n=1; Crypt... 87 3e-16
UniRef50_Q4N0T0 Cluster: DNA-directed RNA polymerase II, putativ... 85 8e-16
UniRef50_Q0UWS5 Cluster: Putative uncharacterized protein; n=1; ... 83 6e-15
UniRef50_A4I2U7 Cluster: DNA-directed RNA polymerase II-like pro... 81 1e-14
UniRef50_A0BUX3 Cluster: Chromosome undetermined scaffold_13, wh... 79 7e-14
UniRef50_A6NJ25 Cluster: Uncharacterized protein ENSP00000330898... 78 2e-13
UniRef50_Q54ES6 Cluster: Putative RNA polymerase III subunit; n=... 77 4e-13
UniRef50_UPI0000E4658A Cluster: PREDICTED: similar to LOC494863 ... 76 6e-13
UniRef50_P28000 Cluster: DNA-directed RNA polymerases I and III ... 75 9e-13
UniRef50_Q4XS21 Cluster: Probable DNA-directed RNA polymerase II... 73 3e-12
UniRef50_Q7R0U9 Cluster: GLP_186_18224_18619; n=2; Giardia intes... 73 6e-12
UniRef50_Q4N286 Cluster: RNA polymerase small subunit, putative;... 72 8e-12
UniRef50_Q09177 Cluster: DNA-directed RNA polymerases I and III ... 71 2e-11
UniRef50_Q6DRI4 Cluster: DNA-directed RNA polymerases I and III ... 70 4e-11
UniRef50_Q9Y2S0 Cluster: DNA-directed RNA polymerases I and III ... 69 6e-11
UniRef50_Q7RYP4 Cluster: Putative uncharacterized protein NCU004... 69 7e-11
UniRef50_A0E1A2 Cluster: Chromosome undetermined scaffold_73, wh... 68 1e-10
UniRef50_Q4PFC9 Cluster: Putative uncharacterized protein; n=1; ... 68 2e-10
UniRef50_Q22RW2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 67 2e-10
UniRef50_A6RF11 Cluster: Predicted protein; n=1; Ajellomyces cap... 67 3e-10
UniRef50_A2DQ63 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 66 5e-10
UniRef50_Q2QWI0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 65 9e-10
UniRef50_Q42483 Cluster: Arabidopsis thaliana RNA polymerase I(A... 64 2e-09
UniRef50_Q5KMK6 Cluster: DNA-directed RNA polymerase, putative; ... 63 4e-09
UniRef50_A3DM82 Cluster: RNA polymerase, dimerisation; n=1; Stap... 63 4e-09
UniRef50_P34476 Cluster: Probable DNA-directed RNA polymerases I... 62 9e-09
UniRef50_Q7R4U8 Cluster: GLP_440_20098_20403; n=1; Giardia lambl... 62 1e-08
UniRef50_Q4Q860 Cluster: DNA-directed RNA polymerase-like protei... 61 2e-08
UniRef50_A7AT13 Cluster: RNA polymerase small subunit protein, p... 61 2e-08
UniRef50_A6S183 Cluster: Putative uncharacterized protein; n=2; ... 61 2e-08
UniRef50_Q01D46 Cluster: Trithorax-like; n=3; Ostreococcus|Rep: ... 60 3e-08
UniRef50_Q96YA7 Cluster: DNA-directed RNA polymerase subunit L; ... 60 3e-08
UniRef50_A5K177 Cluster: RNA polymerase small subunit, putative;... 59 8e-08
UniRef50_A2DKG2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 58 1e-07
UniRef50_UPI0000499BD5 Cluster: RNA polymerases II subunit; n=1;... 57 2e-07
UniRef50_A0E8B2 Cluster: Chromosome undetermined scaffold_82, wh... 56 4e-07
UniRef50_A7AN34 Cluster: Putative uncharacterized protein; n=1; ... 52 9e-06
UniRef50_Q9VIZ0 Cluster: Probable DNA-directed RNA polymerases I... 50 5e-05
UniRef50_Q8SS03 Cluster: DNA-DIRECTED RNA POLYMERASE II; n=1; En... 48 1e-04
UniRef50_Q98SA6 Cluster: Dna directed RNA polymerase II 13.6 kDa... 46 6e-04
UniRef50_A2BNA1 Cluster: DNA-directed RNA polymerase subunit L; ... 46 6e-04
UniRef50_A5UMY3 Cluster: DNA-directed RNA polymerase, subunit L,... 45 0.001
UniRef50_UPI0000D55E69 Cluster: PREDICTED: similar to CG10685-PA... 44 0.002
UniRef50_Q9V2M4 Cluster: DNA-directed RNA polymerase subunit L; ... 44 0.003
UniRef50_O30032 Cluster: DNA-directed RNA polymerase subunit L; ... 41 0.022
UniRef50_A1RX43 Cluster: Transcriptional regulator, Fis family; ... 40 0.030
UniRef50_UPI00015BB1CC Cluster: DNA-directed RNA polymerase, sub... 40 0.039
UniRef50_A0RXH5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.052
UniRef50_Q8SQY2 Cluster: DNA-DIRECTED RNA POLYMERASE I AND III S... 39 0.069
UniRef50_Q38FA5 Cluster: RNA-editing ligase 1, mitochondrial pre... 39 0.091
UniRef50_A3HA23 Cluster: DNA-directed RNA polymerase subunit L; ... 38 0.12
UniRef50_Q9YEZ1 Cluster: DNA-directed RNA polymerase subunit L; ... 38 0.21
UniRef50_Q2NE51 Cluster: RpoL; n=1; Methanosphaera stadtmanae DS... 37 0.37
UniRef50_O27372 Cluster: DNA-directed RNA polymerase subunit L; ... 36 0.48
UniRef50_A7DQB4 Cluster: Putative uncharacterized protein; n=1; ... 35 1.1
UniRef50_UPI00004487EA Cluster: FAST kinase domain-containing pr... 34 2.0
UniRef50_Q9F8Q4 Cluster: Cell envelope proteinase; n=7; Streptoc... 34 2.0
UniRef50_Q4A2Z0 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_Q8ZW46 Cluster: DNA-directed RNA polymerase subunit L; ... 34 2.6
UniRef50_Q9PM80 Cluster: DNA-directed RNA polymerase subunit alp... 34 2.6
UniRef50_Q65184 Cluster: RNA polymerase subunit 3; n=2; African ... 33 3.4
UniRef50_Q98SC4 Cluster: DNA-DIRECTED RNA POLYMERASES I AND III ... 33 3.4
UniRef50_A0DAY0 Cluster: Chromosome undetermined scaffold_43, wh... 33 3.4
UniRef50_Q5UQD9 Cluster: Putative DNA directed RNA polymerase su... 33 3.4
UniRef50_Q57832 Cluster: DNA-directed RNA polymerase subunit L; ... 33 3.4
UniRef50_Q9YW76 Cluster: ORF MSV016 leucine rich repeat gene fam... 33 4.5
UniRef50_A6Q2F5 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_Q5CP80 Cluster: Putative uncharacterized protein; n=2; ... 33 6.0
UniRef50_Q68RU8 Cluster: Putative membrane protein ycf1; n=6; as... 33 6.0
UniRef50_Q74MN9 Cluster: DNA-directed RNA polymerase subunit L; ... 33 6.0
UniRef50_Q3LWC9 Cluster: RNA polymerase subunit 11; n=1; Bigelow... 32 7.9
UniRef50_Q7RS64 Cluster: Plasmodium vivax PV1H14095_P-related; n... 32 7.9
UniRef50_P53103 Cluster: Putative uncharacterized protein YGL182... 32 7.9
>UniRef50_Q7PVQ9 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=6; Coelomata|Rep: DNA-directed RNA polymerase
II subunit RPB11 - Anopheles gambiae (African malaria
mosquito)
Length = 117
Score = 215 bits (525), Expect = 6e-55
Identities = 101/117 (86%), Positives = 109/117 (93%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MNAPPTFESFLLY+GEKK+ KE D KV NAAIFTVNKEDHTLGNMIR+QLLKDP VLFAG
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 514
YK+PHPLEHKFVLRIQTTS+Y+P EAFMNAITDL SELSLFEERF+EA+KEKKEG D
Sbjct: 61 YKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFREAMKEKKEGGD 117
>UniRef50_Q59FR2 Cluster: MGC13098 protein variant; n=8;
Deuterostomia|Rep: MGC13098 protein variant - Homo
sapiens (Human)
Length = 180
Score = 172 bits (419), Expect = 4e-42
Identities = 77/106 (72%), Positives = 92/106 (86%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MNAPP FESFLL++GEK + +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 23 MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 81
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK 481
YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL ELSL EERF+
Sbjct: 82 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFR 127
>UniRef50_Q38859 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=6; Magnoliophyta|Rep: DNA-directed RNA
polymerase II subunit RPB11 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 116
Score = 125 bits (301), Expect = 8e-28
Identities = 54/109 (49%), Positives = 78/109 (71%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MNAP +E F++ +G KKV + DTK+ NAA FTV +EDHT+GN++R QL +D VLFAG
Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 490
Y++PHPL++K ++RI TTS +P +A+ AI DL EL + +F+ +
Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEV 109
>UniRef50_Q54ZA7 Cluster: RNA polymerase II core subunit; n=2;
Dictyostelium discoideum|Rep: RNA polymerase II core
subunit - Dictyostelium discoideum AX4
Length = 120
Score = 121 bits (292), Expect = 1e-26
Identities = 55/117 (47%), Positives = 78/117 (66%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MNAP FE F+L DG KKV DTK+ NA++FT+ KEDHT+GN+IR QL+ D ++FAG
Sbjct: 1 MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 514
Y++PHPLEH +RIQT ++ P E ++ L+ E + E F E +++K+ D
Sbjct: 61 YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKKRNVAD 117
>UniRef50_P38902 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=10; Saccharomycetales|Rep: DNA-directed RNA
polymerase II subunit RPB11 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 120
Score = 116 bits (279), Expect = 4e-25
Identities = 54/106 (50%), Positives = 70/106 (66%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MNAP FE FLL +GE K++ + DTK NA + T KEDHTLGN+IR +LL D KVLFA
Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK 481
YK+ HP +F LRIQTT Y P++A NA + ++L + F+
Sbjct: 61 YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFE 106
>UniRef50_A4S056 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 115
Score = 113 bits (272), Expect = 3e-24
Identities = 48/109 (44%), Positives = 76/109 (69%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MN P + F+L +GE+K+ E DTKV NA F + +EDHT+GN++R +L K+P V+FAG
Sbjct: 1 MNQPSRADRFVLPEGERKLSYERDTKVENAGTFVLQREDHTIGNLLRMELHKNPDVVFAG 60
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 490
YK PHP +H+ VL++ T ++ TP +A +A+T+L +E+ ++F + I
Sbjct: 61 YKNPHPTDHRIVLKVHTNANTTPVQALRDAVTNLRAEVGDLSQQFADEI 109
>UniRef50_Q4PC39 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 145
Score = 111 bits (268), Expect = 8e-24
Identities = 52/114 (45%), Positives = 72/114 (63%)
Frame = +2
Query: 167 NAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGY 346
NAP F+ F+L EK+V+ EDTK+ NAA F NKEDHTLGNM+RH +L +P VLF GY
Sbjct: 3 NAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNKEDHTLGNMLRHAVLANPAVLFCGY 62
Query: 347 KIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEG 508
K+PHPLE K ++IQT TP +A L +++S + ++ ++ G
Sbjct: 63 KVPHPLEPKVFVKIQTDGSLTPTDALKQGSQKLIAQISSLKGAWRTEVQMSGAG 116
>UniRef50_Q5KMB4 Cluster: DNA-directed RNA polymerase ii 13.3 kDa
polypeptide, putative; n=1; Filobasidiella
neoformans|Rep: DNA-directed RNA polymerase ii 13.3 kDa
polypeptide, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 162
Score = 106 bits (254), Expect = 4e-22
Identities = 50/116 (43%), Positives = 72/116 (62%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MN P +S+LL D EK + ED K+ NA+ + ++DHTLGNM+R QL+ DP VLFAG
Sbjct: 1 MNQPNRIDSWLLQDDEKPLTITEDPKLPNASTIVIRRQDHTLGNMLRAQLMLDPTVLFAG 60
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGL 511
YK+PHPLE+ +L+IQT P EA A +L + + +F++ K + G+
Sbjct: 61 YKVPHPLENDILLKIQTDERSNPAEALKRACHELIRQTVHIKAQFQQQAKNIEMGM 116
>UniRef50_P87123 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase II subunit RPB11 - Schizosaccharomyces
pombe (Fission yeast)
Length = 123
Score = 104 bits (250), Expect = 1e-21
Identities = 50/105 (47%), Positives = 67/105 (63%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MN P +E L G KV E D+K NAA+ T+ KEDHTL NM+ +QLL D +VLFAG
Sbjct: 1 MNQPERYELIELM-GLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERF 478
YK+PHPL H F+LR+QT D +P++ ++A L + L + F
Sbjct: 60 YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNF 104
>UniRef50_Q9C256 Cluster: Related to DNA-directed RNA polymerase
13.3K chain; n=3; Sordariales|Rep: Related to
DNA-directed RNA polymerase 13.3K chain - Neurospora
crassa
Length = 133
Score = 97.5 bits (232), Expect = 2e-19
Identities = 47/109 (43%), Positives = 66/109 (60%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MNAP FE FLL DGEKK++++ T ++N + F + KEDHTLGN++ L + P VL AG
Sbjct: 1 MNAPDRFELFLLQDGEKKIEEKVFTGMSNTSDFKILKEDHTLGNLLAEHLKQAPHVLMAG 60
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 490
YKI HP + +RIQT TP+EA + A L + F++ +
Sbjct: 61 YKIAHPNVPELFIRIQTDGSITPREALVGACKQLVAMYGQLGREFQKEL 109
>UniRef50_A4R2Q3 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 130
Score = 94.7 bits (225), Expect = 1e-18
Identities = 46/105 (43%), Positives = 61/105 (58%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MNAP FE FLL GE+K+ + +T ++N + FT KEDHTLGNM+ L + P VL AG
Sbjct: 1 MNAPDRFELFLLEPGEEKLTETINTSMSNTSDFTFKKEDHTLGNMLTEHLKQHPNVLMAG 60
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERF 478
YK+ HP +F LRIQT TP+ ++A + L F
Sbjct: 61 YKVSHPNVPEFFLRIQTDGKVTPKACLLDACRTILHSLGQIRTEF 105
>UniRef50_UPI00004997FF Cluster: RNA polymerases II subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerases II
subunit - Entamoeba histolytica HM-1:IMSS
Length = 112
Score = 87.4 bits (207), Expect = 2e-16
Identities = 43/108 (39%), Positives = 66/108 (61%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MNAP E +++ E+K+ EE+ V FT+ KEDHT GN++R LL++P VLFAG
Sbjct: 1 MNAPDLNEIYVMKPNEQKILCEENGHVCK---FTLVKEDHTAGNILRVMLLRNPHVLFAG 57
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEA 487
Y+ PHPL + + I+T TP++A A+ D+ E+ + + F+ A
Sbjct: 58 YRQPHPLNYVIEMTIRTDMTITPKQALEQAMDDVIHEIEIMQNEFEAA 105
>UniRef50_A3FPR0 Cluster: RNA polymerase II, putative; n=1;
Cryptosporidium parvum Iowa II|Rep: RNA polymerase II,
putative - Cryptosporidium parvum Iowa II
Length = 115
Score = 87.0 bits (206), Expect = 3e-16
Identities = 41/93 (44%), Positives = 59/93 (63%)
Frame = +2
Query: 215 KVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQT 394
+VQ + +++V F + EDHTLGN+I QLL+DP V+FAGYK+PHPLE +RIQT
Sbjct: 17 RVQWKVESRVPCCGSFMIMLEDHTLGNLITTQLLRDPNVIFAGYKVPHPLEPLVQIRIQT 76
Query: 395 TSDYTPQEAFMNAITDLTSELSLFEERFKEAIK 493
+ TP A NAI + E + FK++++
Sbjct: 77 RENTTPFVAIQNAIKSIQMESQVILNSFKDSMR 109
>UniRef50_Q4N0T0 Cluster: DNA-directed RNA polymerase II, putative;
n=2; Theileria|Rep: DNA-directed RNA polymerase II,
putative - Theileria parva
Length = 133
Score = 85.4 bits (202), Expect = 8e-16
Identities = 43/100 (43%), Positives = 63/100 (63%)
Frame = +2
Query: 161 VMNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFA 340
++N P T + L G KKV+ DT+ F V+ EDHT G++IR +L KD +V F
Sbjct: 7 LINKPETADMVELAQGLKKVEWIPDTRFPLCGTFIVHLEDHTFGSLIRSKLSKDDRVTFV 66
Query: 341 GYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELS 460
GY++PHPLE+K +RI+T +D P ++AIT+L + LS
Sbjct: 67 GYRMPHPLENKLEIRIRTKTD-NPFTVILSAITNLRTNLS 105
>UniRef50_Q0UWS5 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 216
Score = 82.6 bits (195), Expect = 6e-15
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 24/143 (16%)
Frame = +2
Query: 146 DNEFVVMNAPPT----FESFLLYDGEKKVQKEEDTK--------------------VTNA 253
DN FV A FE FLL DG++K++ +E+T+ V N
Sbjct: 57 DNRFVSHKADHDAECRFELFLLDDGQQKIEYKEETRKSTYHPALPSDTQANPTTLGVPNT 116
Query: 254 AIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNA 433
IFT NKEDHTLGN+I +LLK P + F+ YK+PHPL F LR+ T TP++A +
Sbjct: 117 GIFTFNKEDHTLGNLISQRLLKYPYITFSAYKVPHPLFATFELRVSTDGSITPKDAIIAC 176
Query: 434 ITDLTSELSLFEERFKEAIKEKK 502
+ +L + F+ KK
Sbjct: 177 CRQVVQDLEDLKRSFQTEWLGKK 199
>UniRef50_A4I2U7 Cluster: DNA-directed RNA polymerase II-like
protein; n=6; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II-like protein - Leishmania infantum
Length = 134
Score = 81.4 bits (192), Expect = 1e-14
Identities = 39/113 (34%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Frame = +2
Query: 179 TFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPH 358
T +S + G++K+ ++ + N+++F + KEDHTL N++R +L + P V AGY++PH
Sbjct: 15 TPDSLVDLPGDRKIVEQISNTMANSSLFKMEKEDHTLANLLRMKLHESPFVQIAGYRVPH 74
Query: 359 PLEHKFVLRIQTTSDYT------PQEAFMNAITDLTSELSLFEERFKEAIKEK 499
P +H LR+QT S+ T P++A +AI +L +FEE+ + + K
Sbjct: 75 PTKHNVELRVQTASNGTDAPVPAPKKALQDAINGCLKDLEVFEEQLRREAQLK 127
>UniRef50_A0BUX3 Cluster: Chromosome undetermined scaffold_13, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_13,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 129
Score = 79.0 bits (186), Expect = 7e-14
Identities = 35/99 (35%), Positives = 55/99 (55%)
Frame = +2
Query: 209 EKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRI 388
E +V E++ K+ NA + EDHT+GN+ R LLK +V F+GY+ HPL+H +++
Sbjct: 24 ESRVILEDEKKMNNACCVKLYLEDHTIGNLTRMNLLKQKEVTFSGYRQIHPLQHTIEIKV 83
Query: 389 QTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKE 505
QT P +A DL+ E EE + + EK++
Sbjct: 84 QTNGSIKPYDAIQKTFQDLSDEFKNLEEEWARKVAEKEK 122
>UniRef50_A6NJ25 Cluster: Uncharacterized protein ENSP00000330898;
n=4; Homo sapiens|Rep: Uncharacterized protein
ENSP00000330898 - Homo sapiens (Human)
Length = 117
Score = 77.8 bits (183), Expect = 2e-13
Identities = 32/47 (68%), Positives = 41/47 (87%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIR 304
+NAPP FESFLL++GEKK+ +DTKV NA +FT+NKEDHTLGN+I+
Sbjct: 1 VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIK 47
>UniRef50_Q54ES6 Cluster: Putative RNA polymerase III subunit; n=1;
Dictyostelium discoideum AX4|Rep: Putative RNA
polymerase III subunit - Dictyostelium discoideum AX4
Length = 116
Score = 76.6 bits (180), Expect = 4e-13
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = +2
Query: 248 NAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFM 427
+ A F EDHTLGN + + L+K+PKV F+GY IPHP +++ LRIQT S+ T QE+ +
Sbjct: 34 DCATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQESLL 93
Query: 428 NAITDLTSELSLFEERFKEAIKE 496
+TD+ E F A+ +
Sbjct: 94 QGLTDIKDISRHIFETFNNALDQ 116
>UniRef50_UPI0000E4658A Cluster: PREDICTED: similar to LOC494863
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to LOC494863 protein -
Strongylocentrotus purpuratus
Length = 117
Score = 75.8 bits (178), Expect = 6e-13
Identities = 34/98 (34%), Positives = 57/98 (58%)
Frame = +2
Query: 221 QKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTS 400
Q ++ ++ F ++ EDHTLGN +R+ ++KDP V F GY +PHP E++ RIQ T
Sbjct: 19 QTTDNWDKSDCVTFVMHNEDHTLGNALRYMVMKDPDVEFCGYSVPHPTENRINFRIQ-TK 77
Query: 401 DYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 514
+ F + +L+ ++ FK+ I++ KEG+D
Sbjct: 78 GAPAGDVFGKGLANLSEVCDHIQQTFKDTIQKFKEGMD 115
>UniRef50_P28000 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=18; Ascomycota|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 142
Score = 75.4 bits (177), Expect = 9e-13
Identities = 38/98 (38%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = +2
Query: 203 DGEK-KVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFV 379
D EK K+ + ++ +A F + +EDHTLGN +R+ ++K+P V F GY IPHP E+
Sbjct: 43 DREKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLN 102
Query: 380 LRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIK 493
+RIQT + T +A + DL + E +F E IK
Sbjct: 103 IRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKIK 140
>UniRef50_Q4XS21 Cluster: Probable DNA-directed RNA polymerase II
subunit RPB11; n=5; Plasmodium|Rep: Probable
DNA-directed RNA polymerase II subunit RPB11 -
Plasmodium chabaudi
Length = 126
Score = 73.3 bits (172), Expect = 3e-12
Identities = 37/113 (32%), Positives = 63/113 (55%)
Frame = +2
Query: 167 NAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGY 346
N P + +L GE+KV+ + K + IFT+ EDHT+GN+I+ L +DPKV FA Y
Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66
Query: 347 KIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKE 505
+ PHPL++ + I+ Y + + + + +++S E F +++ KE
Sbjct: 67 RQPHPLQNAIEITIR-PKGYAGVKLLSDNVHSILNQVSTLRETFANRVQKYKE 118
>UniRef50_Q7R0U9 Cluster: GLP_186_18224_18619; n=2; Giardia
intestinalis|Rep: GLP_186_18224_18619 - Giardia lamblia
ATCC 50803
Length = 131
Score = 72.5 bits (170), Expect = 6e-12
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Frame = +2
Query: 167 NAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGY 346
N P +++ + ++ + NA F + +D+T+G+++R +LL P+V FAG
Sbjct: 3 NVPDRYKTLIPDRRSAELLEVYKVGTANALEFQIPYQDYTIGHILRKELLSMPQVTFAGM 62
Query: 347 KIPHPLEHKFVLRIQT--------TSDYTPQEAFMNAITDLTSELSLFEERFKEAIKE 496
K PHPLE K V+R+QT T TP+ F +A+T +T + L ++ F A+ +
Sbjct: 63 KTPHPLESKIVIRLQTNPSGFLSDTIQATPENCFQSALTKITESMELIKKTFMAAVDD 120
>UniRef50_Q4N286 Cluster: RNA polymerase small subunit, putative;
n=2; Theileria|Rep: RNA polymerase small subunit,
putative - Theileria parva
Length = 92
Score = 72.1 bits (169), Expect = 8e-12
Identities = 32/80 (40%), Positives = 51/80 (63%)
Frame = +2
Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 439
F + EDHTLGN +R L++ V+FAGY +PHP+E + +RIQTT E F++ +
Sbjct: 13 FCIENEDHTLGNTLRALLVERDDVVFAGYSVPHPMEPEMNVRIQTTGQ-PAVEVFLDCLD 71
Query: 440 DLTSELSLFEERFKEAIKEK 499
D+ + E+F++A+KE+
Sbjct: 72 DMVKICDILTEKFEKAMKEQ 91
>UniRef50_Q09177 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=5; Ascomycota|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 -
Schizosaccharomyces pombe (Fission yeast)
Length = 125
Score = 70.9 bits (166), Expect = 2e-11
Identities = 32/77 (41%), Positives = 43/77 (55%)
Frame = +2
Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 439
F + KEDHTLGN +R+ ++K+P+V F GY IPHP E K RIQT T + +
Sbjct: 37 FQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLD 96
Query: 440 DLTSELSLFEERFKEAI 490
DL E+F E +
Sbjct: 97 DLIDLCDAVTEKFTEQL 113
>UniRef50_Q6DRI4 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=6; Euteleostomi|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 112
Score = 69.7 bits (163), Expect = 4e-11
Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = +2
Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 439
F +N+EDHTLGN +R+ ++K V F GY I HP E K RIQT E N +
Sbjct: 25 FVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGLN 84
Query: 440 DLTS----ELSLFEERFKEAIKEKKEGL 511
+LT L FE R KE KE++E +
Sbjct: 85 NLTDVCKHVLQTFEARMKE-FKEQEESM 111
>UniRef50_Q9Y2S0 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=13; Eumetazoa|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 - Homo sapiens
(Human)
Length = 133
Score = 69.3 bits (162), Expect = 6e-11
Identities = 31/82 (37%), Positives = 49/82 (59%)
Frame = +2
Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 439
F +++EDHTLGN +R+ ++K+P+V F GY HP E K LRIQT E F +
Sbjct: 42 FVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLN 101
Query: 440 DLTSELSLFEERFKEAIKEKKE 505
+L + ++F+ +IK+ K+
Sbjct: 102 ELMNVCQHVLDKFEASIKDYKD 123
>UniRef50_Q7RYP4 Cluster: Putative uncharacterized protein
NCU00419.1; n=3; Sordariomycetes|Rep: Putative
uncharacterized protein NCU00419.1 - Neurospora crassa
Length = 156
Score = 68.9 bits (161), Expect = 7e-11
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Frame = +2
Query: 203 DGEKKVQKEEDTKVT-------NAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHP 361
+G+++ ++ E TKV AA F E+HTLGN +R+ ++K+P V F Y IPHP
Sbjct: 42 EGDEEYEEGEGTKVRLLPGSTPTAASFEFLDENHTLGNALRYVIMKNPDVEFCAYAIPHP 101
Query: 362 LEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKE 496
E K +RIQT T EA + D+ + ++F EA K+
Sbjct: 102 SEAKMNVRIQTYEGTTAVEALRKGLRDIQDLCDVVSDKFLEARKD 146
>UniRef50_A0E1A2 Cluster: Chromosome undetermined scaffold_73, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_73,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 68.1 bits (159), Expect = 1e-10
Identities = 34/102 (33%), Positives = 58/102 (56%)
Frame = +2
Query: 194 LLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHK 373
+L K ++ +E + N F EDHTLGN +R+ L P V F GY +PHP E+K
Sbjct: 23 ILAQATKGMEIQEHSDPFNGT-FVFFDEDHTLGNSLRYILANQPNVEFCGYSLPHPSENK 81
Query: 374 FVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEK 499
+R+QT ++ T ++ + + L+ + E++FK+A++ K
Sbjct: 82 MNMRLQTVNE-TKEKIMNDGLKCLSQICDIIEDKFKKALENK 122
>UniRef50_Q4PFC9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 164
Score = 67.7 bits (158), Expect = 2e-10
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +2
Query: 248 NAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFM 427
+A F + +EDHTLGN +R+ ++KDP+V F GY PHP E+K LRIQ + + +A
Sbjct: 32 SAVTFCLKEEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDNASALDALR 91
Query: 428 NAITDLTSELSLFEERFKEAI 490
+AI +L + E + ++
Sbjct: 92 DAIENLDQLFAAIGEAYDRSL 112
>UniRef50_Q22RW2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Tetrahymena thermophila SB210
Length = 150
Score = 67.3 bits (157), Expect = 2e-10
Identities = 34/96 (35%), Positives = 51/96 (53%)
Frame = +2
Query: 209 EKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRI 388
E+K+ +++ K A +T EDHTLGN +R+ L+K V F GY IPHP E+K LR+
Sbjct: 46 EEKLVIDQNEKDRTCATYTFYDEDHTLGNTVRYMLVKRKDVEFCGYTIPHPSENKMNLRL 105
Query: 389 QTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKE 496
QT E + L + ++F A+K+
Sbjct: 106 QTIKK-NSNEVLKEGLDSLAGLCDVLNDKFDAAMKK 140
>UniRef50_A6RF11 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 137
Score = 66.9 bits (156), Expect = 3e-10
Identities = 34/79 (43%), Positives = 44/79 (55%)
Frame = +2
Query: 251 AAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMN 430
AA F +KEDHTLGN +R+ ++K+P+V F GY +PHP E K LRIQT
Sbjct: 49 AASFQFDKEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFSVLEK 108
Query: 431 AITDLTSELSLFEERFKEA 487
+ DL + E F EA
Sbjct: 109 GLDDLMNLCDTVTETFIEA 127
>UniRef50_A2DQ63 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 124
Score = 66.1 bits (154), Expect = 5e-10
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Frame = +2
Query: 218 VQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTT 397
V KEE K N FTV KEDHTLGN++ QLL + ++LFAGY+I HP + +R++ +
Sbjct: 26 VVKEE--KSDNCYTFTVQKEDHTLGNLLTDQLLTENRILFAGYRIEHPTKDLIKIRVKAS 83
Query: 398 SDYT-PQEAFMNAITDLTSELSLFEERF 478
+ P+E AI L ++++ + F
Sbjct: 84 QNVNHPKELIDPAIEALKTKIAGLQSSF 111
>UniRef50_Q2QWI0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein, expressed; n=2;
Magnoliophyta|Rep: RNA polymerase Rpb3/Rpb11
dimerisation domain containing protein, expressed -
Oryza sativa subsp. japonica (Rice)
Length = 108
Score = 65.3 bits (152), Expect = 9e-10
Identities = 28/67 (41%), Positives = 45/67 (67%)
Frame = +2
Query: 245 TNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAF 424
+ A+ F++ +EDHTL N +R L +DP+V F GY IPHP ++K +R+QTT D ++
Sbjct: 9 STASTFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTGD-PAKDVL 67
Query: 425 MNAITDL 445
+++ DL
Sbjct: 68 KDSLQDL 74
>UniRef50_Q42483 Cluster: Arabidopsis thaliana RNA polymerase I(A)
and III(C) 14 kDa subunit (RNA polymerase I(A) and
III(C) 14 kDa subunit); n=2; Arabidopsis thaliana|Rep:
Arabidopsis thaliana RNA polymerase I(A) and III(C) 14
kDa subunit (RNA polymerase I(A) and III(C) 14 kDa
subunit) - Arabidopsis thaliana (Mouse-ear cress)
Length = 122
Score = 64.5 bits (150), Expect = 2e-09
Identities = 35/90 (38%), Positives = 53/90 (58%)
Frame = +2
Query: 236 TKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQ 415
T V++A+ FT+++EDHTL N +R L +DP+V A Y IPHP + +R+QTT D +
Sbjct: 7 TNVSHAS-FTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGD-PAR 64
Query: 416 EAFMNAITDLTSELSLFEERFKEAIKEKKE 505
E F +A +L F +A+ E K+
Sbjct: 65 EVFKDACQELMQMNRHVRSVFDKAVAEYKD 94
>UniRef50_Q5KMK6 Cluster: DNA-directed RNA polymerase, putative;
n=1; Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 155
Score = 63.3 bits (147), Expect = 4e-09
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +2
Query: 248 NAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFM 427
+A F + +EDHTLGN +R ++KDP+V F GY PHP E K LRIQ + + +
Sbjct: 38 SACTFALWQEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQSAVDCLR 97
Query: 428 NAITDLTSELSLFEERFKEAIK 493
A+++L L+ + + +++
Sbjct: 98 RALSNLRDLLNAVNDSYTSSLQ 119
>UniRef50_A3DM82 Cluster: RNA polymerase, dimerisation; n=1;
Staphylothermus marinus F1|Rep: RNA polymerase,
dimerisation - Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1)
Length = 91
Score = 63.3 bits (147), Expect = 4e-09
Identities = 33/97 (34%), Positives = 55/97 (56%)
Frame = +2
Query: 209 EKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRI 388
E KV K+ DT++ I + ED TLGN+I + +K PKV++A Y+IPHPL++ R+
Sbjct: 2 ELKVLKKTDTEI----IIEIIGEDDTLGNLIAKEAMKHPKVVYASYRIPHPLQN----RL 53
Query: 389 QTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEK 499
+ + P + ++T + F FK+ ++EK
Sbjct: 54 EIIINVEPGANISEVLLEITENIRKFLREFKKEVEEK 90
>UniRef50_P34476 Cluster: Probable DNA-directed RNA polymerases I
and III subunit RPAC2; n=2; Caenorhabditis|Rep: Probable
DNA-directed RNA polymerases I and III subunit RPAC2 -
Caenorhabditis elegans
Length = 144
Score = 62.1 bits (144), Expect = 9e-09
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +2
Query: 272 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 451
+EDHT+GN I+H L + +V F GY +PHPLE K + R+QT E A +
Sbjct: 67 EEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQ 126
Query: 452 ELSLFEERFKEAIKEKK 502
S +F+E+ ++ +
Sbjct: 127 IFSTIRGKFEESYEQSQ 143
>UniRef50_Q7R4U8 Cluster: GLP_440_20098_20403; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_440_20098_20403 - Giardia lamblia
ATCC 50803
Length = 101
Score = 61.7 bits (143), Expect = 1e-08
Identities = 32/78 (41%), Positives = 45/78 (57%)
Frame = +2
Query: 254 AIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNA 433
A F + EDHTLGN IR+ L +P V FAGY +PHP E K LRIQ+ + + + + A
Sbjct: 6 ATFVIVNEDHTLGNCIRYCLTCNPAVSFAGYSVPHPAEPKLNLRIQSDTQ-SATDCLLQA 64
Query: 434 ITDLTSELSLFEERFKEA 487
+ + S+ +R EA
Sbjct: 65 ADLMYAIASVLRQRLAEA 82
>UniRef50_Q4Q860 Cluster: DNA-directed RNA polymerase-like protein;
n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase-like protein - Leishmania major
Length = 137
Score = 60.9 bits (141), Expect = 2e-08
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = +2
Query: 209 EKKVQ--KEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVL 382
E+KVQ + T + A+ + EDHTLGN +RH L+++ V AGY IPHPLE K +L
Sbjct: 31 EQKVQIDLQRITDNESTAVVAFSHEDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLL 90
Query: 383 RIQTTSDY 406
+Q SDY
Sbjct: 91 HVQ-ASDY 97
>UniRef50_A7AT13 Cluster: RNA polymerase small subunit protein,
putative; n=1; Babesia bovis|Rep: RNA polymerase small
subunit protein, putative - Babesia bovis
Length = 96
Score = 60.9 bits (141), Expect = 2e-08
Identities = 28/76 (36%), Positives = 45/76 (59%)
Frame = +2
Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 439
F++ EDHTLGN +R L++ V FAGY +PHP++ + +RIQTT + F+ +
Sbjct: 13 FSIENEDHTLGNAVRTLLVEREDVFFAGYSVPHPMQPEVNIRIQTTGK-PAVKIFVECLD 71
Query: 440 DLTSELSLFEERFKEA 487
DL ++ + F +A
Sbjct: 72 DLVEVCNVLTKAFIDA 87
>UniRef50_A6S183 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 110
Score = 60.9 bits (141), Expect = 2e-08
Identities = 27/48 (56%), Positives = 33/48 (68%)
Frame = +2
Query: 251 AAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQT 394
AA F KEDHTLGN +R+ ++K+P V F GY IPHP E +RIQT
Sbjct: 61 AASFEFKKEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEELMNIRIQT 108
>UniRef50_Q01D46 Cluster: Trithorax-like; n=3; Ostreococcus|Rep:
Trithorax-like - Ostreococcus tauri
Length = 2007
Score = 60.5 bits (140), Expect = 3e-08
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +2
Query: 236 TKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQT--TSDYT 409
T A FT+ EDHTLGN +R+ L +P V GY PHP+E + +R+QT T
Sbjct: 1914 TAANAEATFTLEGEDHTLGNALRYVLNANPSVTLCGYSAPHPMERRVNVRVQTHGREGAT 1973
Query: 410 PQEAFMNAITDLTSELSLFEERFKEA 487
+ A +A+ D+ S E +++A
Sbjct: 1974 ARGAMRDALLDVISVCDHVHESYEKA 1999
>UniRef50_Q96YA7 Cluster: DNA-directed RNA polymerase subunit L;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit L - Sulfolobus tokodaii
Length = 93
Score = 60.5 bits (140), Expect = 3e-08
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +2
Query: 266 VNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDL 445
++ E+HT+GN+++ LLK P V FA Y PHPL +L+I T +P+EA + AI
Sbjct: 17 IDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALVKAIELA 76
Query: 446 TSELSLFEERFKEAIK 493
+ + F E K K
Sbjct: 77 EEDTNKFIEEVKSIEK 92
>UniRef50_A5K177 Cluster: RNA polymerase small subunit, putative;
n=5; Plasmodium|Rep: RNA polymerase small subunit,
putative - Plasmodium vivax
Length = 97
Score = 58.8 bits (136), Expect = 8e-08
Identities = 31/88 (35%), Positives = 46/88 (52%)
Frame = +2
Query: 230 EDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYT 409
E + A F EDHTLGN +R LL+ V FAGY +PHP + + LRIQTT +
Sbjct: 8 EHMRTLTHATFCFENEDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTGE-P 66
Query: 410 PQEAFMNAITDLTSELSLFEERFKEAIK 493
+++ DL++ + +F +K
Sbjct: 67 AINILKDSLDDLSNICDIMLNKFDSVVK 94
>UniRef50_A2DKG2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 101
Score = 58.4 bits (135), Expect = 1e-07
Identities = 29/93 (31%), Positives = 49/93 (52%)
Frame = +2
Query: 209 EKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRI 388
E + +++ + + +FT E +T+GN +R +L++PKV F GY +PHP E K LR+
Sbjct: 5 ELVITYDDEKPSSGSMLFT--GETYTMGNALRQTILQNPKVNFCGYTVPHPAETKVALRV 62
Query: 389 QTTSDYTPQEAFMNAITDLTSELSLFEERFKEA 487
Q D + ++ I+D + E F A
Sbjct: 63 QADDDEKITDIVLSGISDFKQWCNNTETEFDNA 95
>UniRef50_UPI0000499BD5 Cluster: RNA polymerases II subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerases II
subunit - Entamoeba histolytica HM-1:IMSS
Length = 85
Score = 57.2 bits (132), Expect = 2e-07
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +2
Query: 242 VTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQT--TSDYTPQ 415
++N +T+ EDHT N +RH + P GY IPHP + K V RIQT +S+ TP
Sbjct: 1 MSNGISYTIEGEDHTFANPLRHVIANLPDTDLCGYSIPHPSDTKVVFRIQTQKSSNKTPF 60
Query: 416 EAFMNAITDLTSELSLFEERFKEA 487
+ + +L ++ E ++ A
Sbjct: 61 DVMEDGCKELIRQMDELNELYEAA 84
>UniRef50_A0E8B2 Cluster: Chromosome undetermined scaffold_82, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_82,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 97
Score = 56.4 bits (130), Expect = 4e-07
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = +2
Query: 242 VTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEA 421
+ NA + ED T+GN++R LLK +V F+ + HPL+H ++++T P +A
Sbjct: 1 MNNACCVKLILEDRTIGNLLRTNLLKQKEVTFSRQRQIHPLQHTIEIKVKTKGTIKPYDA 60
Query: 422 FMNAITDLTSELSLFEERFKEA--IKEKKEGL 511
+ DL+ E E+ + A + EK++ L
Sbjct: 61 IEKTLKDLSEEFKNLEDEWARARKVAEKEKHL 92
>UniRef50_A7AN34 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 92
Score = 52.0 bits (119), Expect = 9e-06
Identities = 23/71 (32%), Positives = 43/71 (60%)
Frame = +2
Query: 287 LGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLF 466
LG ++ +L KD +V F GY++PHPLE+K +R++ D +P +NAI+ + +
Sbjct: 19 LGQGVKKRLSKDERVAFVGYRMPHPLENKLEIRLRCKVD-SPFTVMLNAISSVRLNIGHL 77
Query: 467 EERFKEAIKEK 499
++ + ++EK
Sbjct: 78 KKVYLSTLREK 88
>UniRef50_Q9VIZ0 Cluster: Probable DNA-directed RNA polymerases I
and III subunit RPAC2; n=5; Diptera|Rep: Probable
DNA-directed RNA polymerases I and III subunit RPAC2 -
Drosophila melanogaster (Fruit fly)
Length = 105
Score = 49.6 bits (113), Expect = 5e-05
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +2
Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSD 403
F E HTLGN ++ + + P+V F GY IPHP E K RIQ+ D
Sbjct: 20 FVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD 67
>UniRef50_Q8SS03 Cluster: DNA-DIRECTED RNA POLYMERASE II; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE II - Encephalitozoon cuniculi
Length = 96
Score = 48.0 bits (109), Expect = 1e-04
Identities = 22/90 (24%), Positives = 41/90 (45%)
Frame = +2
Query: 212 KKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQ 391
+KV N + E HTLGN++ +LL+D + LF+ Y++ HP + LR+
Sbjct: 5 RKVTMNYVGNTRNTIELRIEDETHTLGNLLSEELLEDKRCLFSAYRVEHPADTHVFLRLT 64
Query: 392 TTSDYTPQEAFMNAITDLTSELSLFEERFK 481
D ++ + + + E + + K
Sbjct: 65 ADRDCQVRDLLLETLKRVEEETTSLMNQLK 94
>UniRef50_Q98SA6 Cluster: Dna directed RNA polymerase II 13.6 kDa
chain; n=1; Guillardia theta|Rep: Dna directed RNA
polymerase II 13.6 kDa chain - Guillardia theta
(Cryptomonas phi)
Length = 108
Score = 46.0 bits (104), Expect = 6e-04
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +2
Query: 248 NAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFM 427
N F ED T+G ++ ++L VLF GYK HPL++ L+I+T S P
Sbjct: 28 NTKEFLFENEDATMGEILVYKLENHKNVLFCGYKKLHPLDNNIFLKIKTNSFTDPVLELE 87
Query: 428 NAITDLTSELSLFE 469
AI ++ +LS +
Sbjct: 88 WAIKEIYVDLSYIQ 101
>UniRef50_A2BNA1 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Hyperthermus butylicus DSM 5456|Rep: DNA-directed
RNA polymerase subunit L - Hyperthermus butylicus
(strain DSM 5456 / JCM 9403)
Length = 105
Score = 46.0 bits (104), Expect = 6e-04
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +2
Query: 275 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 454
ED T+ N+I ++ P V++A Y I HPL V+ + T P + + D+ ++
Sbjct: 24 EDQTIANLIAKYAIRKPGVVYASYIISHPLVSNPVIVLSTDGSRDPLDVLEEVLKDIITD 83
Query: 455 LSLFEERFKEAIK 493
F E F A++
Sbjct: 84 AKKFIEEFDRALE 96
>UniRef50_A5UMY3 Cluster: DNA-directed RNA polymerase, subunit L,
RpoL; n=1; Methanobrevibacter smithii ATCC 35061|Rep:
DNA-directed RNA polymerase, subunit L, RpoL -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 96
Score = 45.2 bits (102), Expect = 0.001
Identities = 23/77 (29%), Positives = 41/77 (53%)
Frame = +2
Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 439
F V+ E H + N +RH L++D V +A Y I HPL + + I+T P++ A +
Sbjct: 20 FIVHGESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAAS 79
Query: 440 DLTSELSLFEERFKEAI 490
L + + F++ +E +
Sbjct: 80 QLKDDAADFKKLIEETL 96
>UniRef50_UPI0000D55E69 Cluster: PREDICTED: similar to CG10685-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG10685-PA - Tribolium castaneum
Length = 105
Score = 44.0 bits (99), Expect = 0.002
Identities = 24/64 (37%), Positives = 32/64 (50%)
Frame = +2
Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 439
F + E HTLGN +R + P V F Y +PHP+E LRIQ S +A +
Sbjct: 19 FILQGEGHTLGNALRCVISGYPDVEFCAYTVPHPMECSMHLRIQMRSG-RAVDALKRGLE 77
Query: 440 DLTS 451
DL +
Sbjct: 78 DLAA 81
>UniRef50_Q9V2M4 Cluster: DNA-directed RNA polymerase subunit L;
n=4; Thermococcaceae|Rep: DNA-directed RNA polymerase
subunit L - Pyrococcus abyssi
Length = 95
Score = 43.6 bits (98), Expect = 0.003
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHP--LEHKFVLRIQTTSDYTPQEAFMNA 433
F + EDHT N++ L ++P V F Y I HP + K R+ T TP++A A
Sbjct: 15 FYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITPEKALEEA 74
Query: 434 ITDLTSELSLFEERFKEAIK 493
+ + +++AIK
Sbjct: 75 AKKIFDRAKEVLDAWEKAIK 94
>UniRef50_O30032 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Archaeoglobus fulgidus|Rep: DNA-directed RNA
polymerase subunit L - Archaeoglobus fulgidus
Length = 86
Score = 40.7 bits (91), Expect = 0.022
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +2
Query: 266 VNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNA 433
+ E HT N+++H L++D V+ A Y IPHPL + + I+ TS P EA A
Sbjct: 17 IKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIK-TSGVDPLEAVKRA 71
>UniRef50_A1RX43 Cluster: Transcriptional regulator, Fis family;
n=1; Thermofilum pendens Hrk 5|Rep: Transcriptional
regulator, Fis family - Thermofilum pendens (strain Hrk
5)
Length = 101
Score = 40.3 bits (90), Expect = 0.030
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +2
Query: 245 TNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAF 424
TN + E HTL N++ +L + P V A Y++ HPL + L ++T P EA
Sbjct: 21 TNVLELRIRGEGHTLLNLLVDELNRIPDVE-ATYRVDHPLLNVAHLLVRTKGSKQPLEAI 79
Query: 425 MNAITDLTSELSLFEE 472
A+ L ++L + E
Sbjct: 80 REAVESLRAKLKVVAE 95
>UniRef50_UPI00015BB1CC Cluster: DNA-directed RNA polymerase,
subunit L; n=1; Ignicoccus hospitalis KIN4/I|Rep:
DNA-directed RNA polymerase, subunit L - Ignicoccus
hospitalis KIN4/I
Length = 98
Score = 39.9 bits (89), Expect = 0.039
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +2
Query: 266 VNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDL 445
+ E HTLGN+I +L K + A Y + HPL + I+T P E + I +
Sbjct: 25 IPNESHTLGNLIT-KLASRKKGVTALYMVEHPLRQVLWITIRTDGSVDPYEVLLETIDEA 83
Query: 446 TSELSLFEERFKE 484
+ L+ F +E
Sbjct: 84 INYLNQFVRELEE 96
>UniRef50_A0RXH5 Cluster: Putative uncharacterized protein; n=1;
Cenarchaeum symbiosum|Rep: Putative uncharacterized
protein - Cenarchaeum symbiosum
Length = 94
Score = 39.5 bits (88), Expect = 0.052
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +2
Query: 254 AIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNA 433
A ++ + D + +++H+LLK + FAG + H L + +R+ T+S +P +A +A
Sbjct: 13 ANLSIRESDIGILYIVQHELLKKSGIEFAGVILKHQLTSEIWMRVNTSSG-SPVKAITDA 71
Query: 434 ITDLTSELSLFEERFKEAIKEKK 502
S E+ FK IK K
Sbjct: 72 ADASVSTFGDLEKLFKSKIKVDK 94
>UniRef50_Q8SQY2 Cluster: DNA-DIRECTED RNA POLYMERASE I AND III
SUBUNIT 14K; n=1; Encephalitozoon cuniculi|Rep:
DNA-DIRECTED RNA POLYMERASE I AND III SUBUNIT 14K -
Encephalitozoon cuniculi
Length = 104
Score = 39.1 bits (87), Expect = 0.069
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 218 VQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKD---PKVLFAGYKIPHPLEHKFVLRI 388
+ KE K+ N V KEDHT+ N +R + K+ KV GY IPHP + + I
Sbjct: 1 MSKEPRIKILNGQTVQVRKEDHTIMNPLRWCIGKNFTGEKVELVGYTIPHPSDDISNITI 60
Query: 389 Q 391
Q
Sbjct: 61 Q 61
>UniRef50_Q38FA5 Cluster: RNA-editing ligase 1, mitochondrial
precursor; n=9; Trypanosomatidae|Rep: RNA-editing ligase
1, mitochondrial precursor - Trypanosoma brucei brucei
Length = 469
Score = 38.7 bits (86), Expect = 0.091
Identities = 23/87 (26%), Positives = 40/87 (45%)
Frame = +2
Query: 245 TNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAF 424
TN I+ +N+ DH + + + DP F GY H L +F +I+ +D Q+
Sbjct: 91 TNFGIYLINQGDHEVVRFAKRSGIMDPNENFFGY---HILIDEFTAQIRILNDLLKQKYG 147
Query: 425 MNAITDLTSELSLFEERFKEAIKEKKE 505
++ + L LF ++K + K E
Sbjct: 148 LSRVGRLVLNGELFGAKYKHPLVPKSE 174
>UniRef50_A3HA23 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Caldivirga maquilingensis IC-167|Rep: DNA-directed
RNA polymerase subunit L - Caldivirga maquilingensis
IC-167
Length = 104
Score = 38.3 bits (85), Expect = 0.12
Identities = 19/69 (27%), Positives = 38/69 (55%)
Frame = +2
Query: 263 TVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITD 442
TV ED+T+ + + +L+DP+V FA + + HPL L+++T P + +A+
Sbjct: 19 TVEGEDYTVMSPLLTYILQDPEVEFATFDMDHPLLRNITLKLRTKGK-DPLKVLEDAVNR 77
Query: 443 LTSELSLFE 469
+ +++ E
Sbjct: 78 ILNDIGELE 86
>UniRef50_Q9YEZ1 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Aeropyrum pernix|Rep: DNA-directed RNA polymerase
subunit L - Aeropyrum pernix
Length = 99
Score = 37.5 bits (83), Expect = 0.21
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +2
Query: 257 IFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAI 436
+ V EDHTLG ++ + + A Y+ HP+E + ++ D +E A
Sbjct: 15 VIQVYGEDHTLGTLLVEAIKRVSNPKLAYYEAVHPMEDIIQVYVKYEDDVDIKEVLRKAS 74
Query: 437 TDLTSELSLFEERFKEAIKEKKEG 508
L + F R+ EA++ + G
Sbjct: 75 DYLLEVIGDFRRRYLEALERRGGG 98
>UniRef50_Q2NE51 Cluster: RpoL; n=1; Methanosphaera stadtmanae DSM
3091|Rep: RpoL - Methanosphaera stadtmanae (strain DSM
3091)
Length = 88
Score = 36.7 bits (81), Expect = 0.37
Identities = 24/94 (25%), Positives = 49/94 (52%)
Frame = +2
Query: 215 KVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQT 394
KV +E+ K+ + + E HT+ N++R +L+ +V A Y I HPL + I++
Sbjct: 2 KVIEEQPEKL----VLEITGESHTICNILRKRLMDYDEVDAAAYDITHPLIGQPEFEIRS 57
Query: 395 TSDYTPQEAFMNAITDLTSELSLFEERFKEAIKE 496
++ P+++ NA ++ E F++ + +E
Sbjct: 58 SN---PRKSMTNAAKEVKEEALSFKDALIKGFEE 88
>UniRef50_O27372 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: DNA-directed RNA polymerase subunit L -
Methanobacterium thermoautotrophicum
Length = 85
Score = 36.3 bits (80), Expect = 0.48
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +2
Query: 275 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 454
E HTL N++R L++D KV A Y I HP+ + L I+ S +A + D E
Sbjct: 18 ETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIRAGSPKKSLKAAAETLRDRCDE 77
>UniRef50_A7DQB4 Cluster: Putative uncharacterized protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Putative
uncharacterized protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 92
Score = 35.1 bits (77), Expect = 1.1
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = +2
Query: 263 TVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTS 400
++ + D + +I+H+LLK+ + FAG + HPL ++ +RI ++S
Sbjct: 16 SITETDIGILYLIQHELLKESNIDFAGVIVKHPLTNECWMRINSSS 61
>UniRef50_UPI00004487EA Cluster: FAST kinase domain-containing
protein 1.; n=3; Amniota|Rep: FAST kinase
domain-containing protein 1. - Gallus gallus
Length = 829
Score = 34.3 bits (75), Expect = 2.0
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 356 HPLEHKFVLRIQTTSDYTP---QEAFMNAITDLTSELSLFE 469
HPLE F+L + + +Y P +E F + I LTS LS FE
Sbjct: 553 HPLEMYFILHLFSVLNYDPPANEEFFQSCIQHLTSNLSCFE 593
>UniRef50_Q9F8Q4 Cluster: Cell envelope proteinase; n=7;
Streptococcus|Rep: Cell envelope proteinase -
Streptococcus thermophilus
Length = 1585
Score = 34.3 bits (75), Expect = 2.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 209 EKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYK 349
EKKV++EE V + N+E+ N+ + ++ PKV ++GYK
Sbjct: 117 EKKVEEEEKLSVADETTAITNQEEAKPQNIDSNTIITVPKVWYSGYK 163
>UniRef50_Q4A2Z0 Cluster: Putative uncharacterized protein; n=1;
Emiliania huxleyi virus 86|Rep: Putative uncharacterized
protein - Emiliania huxleyi virus 86
Length = 108
Score = 33.9 bits (74), Expect = 2.6
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +2
Query: 257 IFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHP 361
++T+N + HTL N++ +L+ + K A Y++PHP
Sbjct: 3 VYTINGDAHTLANIVSSELMFNNK--DASYRVPHP 35
>UniRef50_Q8ZW46 Cluster: DNA-directed RNA polymerase subunit L;
n=4; Pyrobaculum|Rep: DNA-directed RNA polymerase
subunit L - Pyrobaculum aerophilum
Length = 92
Score = 33.9 bits (74), Expect = 2.6
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 275 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 454
E +TL + + L DP V + + + HPL+ +++ P EA A+ + S+
Sbjct: 24 ETYTLFSPLVEYLSNDPDVEYVQFDVDHPLQENAYFKLKVKRG-NPLEAIQRAVNAILSD 82
Query: 455 LSLFEERF 478
L E F
Sbjct: 83 LEELERGF 90
>UniRef50_Q9PM80 Cluster: DNA-directed RNA polymerase subunit alpha;
n=16; Epsilonproteobacteria|Rep: DNA-directed RNA
polymerase subunit alpha - Campylobacter jejuni
Length = 337
Score = 33.9 bits (74), Expect = 2.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 356 HPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEE 472
+P K VL + T TP EAF NA+ + +LS+F++
Sbjct: 191 NPDYEKVVLTVTTDGQITPNEAFQNALEAMYKQLSVFDK 229
>UniRef50_Q65184 Cluster: RNA polymerase subunit 3; n=2; African
swine fever virus|Rep: RNA polymerase subunit 3 -
African swine fever virus (ASFV)
Length = 359
Score = 33.5 bits (73), Expect = 3.4
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 227 EEDTKVTNAAIFTVNKEDHTLGNMIRHQLLK-DPKVLFAGYK-IPHPLE 367
EE TK AI T+ E HT+GN+++ + + P + F GY+ +PH E
Sbjct: 274 EEKTK----AIITIKDETHTIGNLLKTCIYEMIPDISFVGYQCVPHKQE 318
>UniRef50_Q98SC4 Cluster: DNA-DIRECTED RNA POLYMERASES I AND III 16
KD POLYPEPTIDE; n=1; Guillardia theta|Rep: DNA-DIRECTED
RNA POLYMERASES I AND III 16 KD POLYPEPTIDE - Guillardia
theta (Cryptomonas phi)
Length = 107
Score = 33.5 bits (73), Expect = 3.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 242 VTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEH 370
V N T E +TLGN++++ + + + GY IPHP E+
Sbjct: 11 VNNVTKITFYNESNTLGNLLQYFMKFNGLIDVCGYYIPHPSEN 53
>UniRef50_A0DAY0 Cluster: Chromosome undetermined scaffold_43, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_43,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 983
Score = 33.5 bits (73), Expect = 3.4
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 398 SDYTPQEAFMN-AITDLTSELSLFEERFKEAIKEKKE 505
+DY Q A M+ ITDL S+LS RF+E +K+K E
Sbjct: 403 NDYAKQIADMDDEITDLKSKLSALRARFQELVKQKVE 439
>UniRef50_Q5UQD9 Cluster: Putative DNA directed RNA polymerase
subunit R470; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative DNA directed RNA polymerase subunit R470 -
Mimivirus
Length = 357
Score = 33.5 bits (73), Expect = 3.4
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 230 EDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVL--RIQTTSD 403
ED T + EDHTLG ++ + L + V AGY +PH L K ++ ++ S+
Sbjct: 270 EDRDPTEQIDIELYGEDHTLGTILENVLQQCEYVEKAGYCMPHLLIDKILVSYKLYDDSE 329
Query: 404 YTPQEAFMNAITDL 445
P + + IT L
Sbjct: 330 IGPIKVLNDCITYL 343
>UniRef50_Q57832 Cluster: DNA-directed RNA polymerase subunit L;
n=6; Methanococcales|Rep: DNA-directed RNA polymerase
subunit L - Methanococcus jannaschii
Length = 99
Score = 33.5 bits (73), Expect = 3.4
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 275 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEH 370
EDH+L N+++ LL V A Y I HPL H
Sbjct: 20 EDHSLPNLLKDILLTKEGVKMASYSIDHPLLH 51
>UniRef50_Q9YW76 Cluster: ORF MSV016 leucine rich repeat gene family
protein, similar to Amsacta moorei entomopoxvirus Q3 ORF
SW:P28854; n=1; Melanoplus sanguinipes
entomopoxvirus|Rep: ORF MSV016 leucine rich repeat gene
family protein, similar to Amsacta moorei entomopoxvirus
Q3 ORF SW:P28854 - Melanoplus sanguinipes entomopoxvirus
(MsEPV)
Length = 572
Score = 33.1 bits (72), Expect = 4.5
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 190 RFECRRC-IHDYKFVIKFFGLKILQRNPNKAIFSFFYQTN 74
R EC+ C I D+KFV LK L N NK+ SF Y+ N
Sbjct: 498 RLECKNCNIKDFKFVEPLSILKYLYMNNNKS--SFIYKCN 535
>UniRef50_A6Q2F5 Cluster: Putative uncharacterized protein; n=1;
Nitratiruptor sp. SB155-2|Rep: Putative uncharacterized
protein - Nitratiruptor sp. (strain SB155-2)
Length = 536
Score = 33.1 bits (72), Expect = 4.5
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 194 LLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKV-LFAGYKIPHPLEH 370
L D +++K + K+TN A+ N E H L ++R LKD L+ YK+ +EH
Sbjct: 333 LTLDEFDEIEKNIE-KLTNDALLRKNSELHKLNMLLREMALKDALTGLYNRYKMIEDIEH 391
Query: 371 K 373
+
Sbjct: 392 Q 392
>UniRef50_Q5CP80 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium hominis
Length = 98
Score = 32.7 bits (71), Expect = 6.0
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 320 DPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELS 460
+P FAGY IPHP LRI+T S+ + N DL + LS
Sbjct: 3 NPNTTFAGYAIPHPSISTMNLRIETISNVEVDDKNYN--LDLKAALS 47
>UniRef50_Q68RU8 Cluster: Putative membrane protein ycf1; n=6;
asterids|Rep: Putative membrane protein ycf1 - Panax
ginseng (Korean ginseng)
Length = 1919
Score = 32.7 bits (71), Expect = 6.0
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 368 HKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEG 508
H +I++T +Y+P+E + +TD TS + ++ K KEKK+G
Sbjct: 1074 HNSFNKIRSTDNYSPREKKIKNLTDRTSPI---RKKIKSITKEKKKG 1117
>UniRef50_Q74MN9 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Nanoarchaeum equitans|Rep: DNA-directed RNA
polymerase subunit L - Nanoarchaeum equitans
Length = 96
Score = 32.7 bits (71), Expect = 6.0
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 275 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 454
E HTL N ++ V A Y I HPL+ I+T ++A + A+ L E
Sbjct: 25 ETHTLFNALKEIAYTINGVKKAAYFIEHPLKDNNYFIIETDGSIKARDALIQALKKLKEE 84
Query: 455 LSLFEE 472
L F++
Sbjct: 85 LLNFKD 90
>UniRef50_Q3LWC9 Cluster: RNA polymerase subunit 11; n=1;
Bigelowiella natans|Rep: RNA polymerase subunit 11 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 97
Score = 32.3 bits (70), Expect = 7.9
Identities = 16/61 (26%), Positives = 35/61 (57%)
Frame = +2
Query: 212 KKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQ 391
+K +K ++ I + + + L N+++++L + +LF GY++ +P+ K VL I+
Sbjct: 2 QKFKKTIPSRSKFKIILDMKESNIYLVNLLKNKLYHNIYLLFVGYRVINPMLEKVVLTIE 61
Query: 392 T 394
T
Sbjct: 62 T 62
>UniRef50_Q7RS64 Cluster: Plasmodium vivax PV1H14095_P-related; n=3;
Plasmodium (Vinckeia)|Rep: Plasmodium vivax
PV1H14095_P-related - Plasmodium yoelii yoelii
Length = 1249
Score = 32.3 bits (70), Expect = 7.9
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 83 IEETKNRFIRISL*YF*SKKFDNEFVVMNAPPTFESFLLYDGEKKVQKE 229
+ ++ NRF + + Y KF+N+F++ + E FLLYD ++K KE
Sbjct: 482 LNQSGNRFGKENNYYDIQNKFNNQFLI-DQTNNNECFLLYDSDEKTYKE 529
>UniRef50_P53103 Cluster: Putative uncharacterized protein YGL182C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YGL182C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 107
Score = 32.3 bits (70), Expect = 7.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 142 FFGLKILQRNPNKAIFSFFYQTNSSQINFKLNNLFIK 32
F LKIL PN F FY + S+I ++ L IK
Sbjct: 40 FLALKILNNEPNLPSFLLFYASKKSKITAQITKLHIK 76
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,847,545
Number of Sequences: 1657284
Number of extensions: 7987364
Number of successful extensions: 20873
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 20297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20865
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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